Gene Sde_0580 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_0580 
Symbol 
ID3964987 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp715832 
End bp718078 
Gene Length2247 bp 
Protein Length748 aa 
Translation table11 
GC content48% 
IMG OID637919643 
Productalkaline phosphatase 
Protein accessionYP_526056 
Protein GI90020229 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00489448 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAAACGAT TGAAGTTGAC AGCGGCAATA TTGTCTTCCC TTGCTTTGGC GGCCTGTGGT 
GGCGACGGTA AGGATGGTGC AAATGGAACC GATGGCGCTA ACGGCGCAGC CGGAGACAAT
GGTGTAAACA GCCTAATAGC GCAGGTGGTA CTAGAGGCCG GCCACGGCGA GTGTCCTTTA
GGTGGCGTGG CTATTCACTC TGGTTTAGAT GTTGATGCCA GCGGTATGTT GGATGAGTCC
GAAATTACAG AAACCAACTA TGTGTGTAAT AACGACGCTT TCGAACTACA GCTATTGCAT
TTTGCTGATG TAGACGGCGG ACGAGATATT ATAAATAACG CGGTGCGATT TTCTGCGCTG
GTTAAAAGCT TTAAAAACGA TTACGCCAAC ACCTTGCTAT TAAGCTCTGG TGATAACTGG
ATTCCAGGGC CGGAATACAA TGTGGCAAGT GATAACGCGC TGCGACCTGT ATTGGGCGTA
ACCGGTACTG GCCGTGCGCA TGTTGCTTAT TTGAATGCAT TGGGCGTGCA GGCGTCGGTA
TTTGGTAATC ACGAATTCGA TTTAGGCACC GGCGAAGTGG CCGCATTACT TTCTGCCGAA
GCAAGTGGCG ATAACGCATG GGCTGGTGCT CGCTTTCCTT ATCTTTCAGC GAATATTGAT
TTTTCTACCG ATGCAAATTT GGCACCGCTT GTGGGTGCGA ATGGCGCACC GGCCGCTGCA
CTAAAAAATA AAATTGCAGC GAGTACTGTA ATTACCGTAG GCGGTCAGCG CGTTGGTGTG
GTAGGGGCGA CCACGTCTAC ATTACATAGT ATTTCTTCAC CGGGCGATGT CACTATAGCT
CCAGCTGACA GCGCGGATAT AAATGCGCTA GCGGCTTCTA TTCAGGCCAG TGTGGATGAG
TTAACTGCAA CAGGTATTAA CAAAGTGATT GTATTGGCGC ACATGCAGCA AATTGCTATA
GAGCGCGAAT TGGCAACACT GCTAAGTGAT GTAGATATTA TTGTTGCCGG TGGTTCAAAC
ACGTTATTGG CGGATACCAA CGATAGATTG CGCGGTGGTG ATACTGCTGT AGATACTTAC
CCCTTAGTTT TTGATAGTGC AGCTGACGAG CCTACACTAG TGGTGAATAC CGATGGCGAT
TACACTTACC TTGGTCGCTT GGTGGTTAGC TTCGATAGTA ACGGCGTAAT TATTCCTAGC
TTGATGGATG ATGCTATAAA TGGAGTATAC GCAGCAGATG AAACAGGCCT AATTGAAAAT
GGTTTAGGTG TAAGTGACGC GATTGCAGAA GTAAAAGCCA TTTCTGATAC GTTAACGTCG
GCGCTAGCTG CACGCGCAGG TAATGTATTT GGCTCTACCT CGGTGTACTT AAATGGTGAG
CGCAGTGCGG TACGTAGCGA AGAAACCAAC TTTGGCAGCC TTACTGCTCA GGCTAACTTG
GAGTACGCAC AATTAACCGA TGCGAGCGTT GCTGTTTCAA TTAAAAATGG CGGTGGTATT
CGTGCATCTA TTGGCTACTG CAGTGTGCCA CCCGGTGCAA CCGGCGATGA TGCGGTAGTG
TGTAATGCCC CTGCTGGTAT CGAAGGCATA AATAACCCAG GTGAAGTGTC GCAATTAGAT
TTAGAAATTG CGTTACGTTT TAATAATTCA CTGTCACTTG TTACCCTTAC CGGTGAGCAA
TTAAAACAAG TATTAGAGCA CGGTGTAGCG GCAAGTAGCG ATGGCGCAAC CCCTGGTCAA
TTCCCACAGG TTGCTGGTAT CCGCTTTAGT TTTGACACTG CACAAACGGC TCAAACGGTA
GATGATTCTG TGTCGCCACC TGCGGTGAGC ACGGCGGGTT CGCGTATTCG CAACCTTGTA
GTGTTAGATA GCAATGGTGC TCAGGCCGAT GGCAGTGAAG TTGTAGTGGT AGAAAACGGT
GTACTTAACC CTACAGCCGC TTCGCAAACT TTTAGAGTGG TTACGTTAGG CTTCTTGGCT
GGCGGCGGAG ATCGCTACCC ATTCCCATCG GGTGCGGGTG CTAATATTGT GGATCTTGAA
GCCGAAGGTG TGCAAACAGG CAATACAGTT TTTGCTGACG ATGGCACCGA GCAAGATGCG
CTAGCAGAAT ATATGTTCAC TCATTACCCA GCCGACGATA GCGATGCAAC GCCAAGCTTT
AGTGTGGAGG ATGTAAGTGC CGAGCAGGAT GTGGTTATTC AAAACTTAAG TAAGGTTGCA
GCAGATACTG TACTAAGTGC AGATTAA
 
Protein sequence
MKRLKLTAAI LSSLALAACG GDGKDGANGT DGANGAAGDN GVNSLIAQVV LEAGHGECPL 
GGVAIHSGLD VDASGMLDES EITETNYVCN NDAFELQLLH FADVDGGRDI INNAVRFSAL
VKSFKNDYAN TLLLSSGDNW IPGPEYNVAS DNALRPVLGV TGTGRAHVAY LNALGVQASV
FGNHEFDLGT GEVAALLSAE ASGDNAWAGA RFPYLSANID FSTDANLAPL VGANGAPAAA
LKNKIAASTV ITVGGQRVGV VGATTSTLHS ISSPGDVTIA PADSADINAL AASIQASVDE
LTATGINKVI VLAHMQQIAI ERELATLLSD VDIIVAGGSN TLLADTNDRL RGGDTAVDTY
PLVFDSAADE PTLVVNTDGD YTYLGRLVVS FDSNGVIIPS LMDDAINGVY AADETGLIEN
GLGVSDAIAE VKAISDTLTS ALAARAGNVF GSTSVYLNGE RSAVRSEETN FGSLTAQANL
EYAQLTDASV AVSIKNGGGI RASIGYCSVP PGATGDDAVV CNAPAGIEGI NNPGEVSQLD
LEIALRFNNS LSLVTLTGEQ LKQVLEHGVA ASSDGATPGQ FPQVAGIRFS FDTAQTAQTV
DDSVSPPAVS TAGSRIRNLV VLDSNGAQAD GSEVVVVENG VLNPTAASQT FRVVTLGFLA
GGGDRYPFPS GAGANIVDLE AEGVQTGNTV FADDGTEQDA LAEYMFTHYP ADDSDATPSF
SVEDVSAEQD VVIQNLSKVA ADTVLSAD