| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0563 |
|---|
| Symbol | |
|---|
| ID | 3964854 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 695508 |
|---|
| End bp | 697331 |
|---|
| Gene Length | 1824 bp |
|---|
| Protein Length | 607 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637919626 |
|---|
| Product | Alpha-amylase |
|---|
| Protein accession | YP_526039 |
|---|
| Protein GI | 90020212 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.611678 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.295943 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTAATA AATTACTTTT GGCCGCTTCT TTTTCAGCAG TATTAGCGAC CGCTGCAGCT
ACCCATGCAG CAACCGAACA AAATCAATCT AGCAGCGCCG TACTTCTTCA AGGTTTCCAT
TGGAACTCTC ACGATTACGA TTGGTACAGC GTAATGCAAG CCAACGTAAA CAGCATAGAT
AACCTAGGGG CGACGCATGT GTGGTTTGCA CCGGTAAGTG ATGCCGCCTC AGATGAAGGC
TACTTGCCGC GCGAGCTGTA TGATGTAACA ACAAACTACG GTACCGAGCA GCAACTGCGT
ACCCTTGTAG CTTCTTTAAA CGCTAAAGGC ATAGATTCCG TTGCGGATAT TGTAATTAAC
CACCGCGTAG GCACCACAGA TTGGGCCGAT TTTACTAACC CCACTTGGGG CTCGTGGGCG
GTTACCTGTA ACGATGAGTG GCCGGGCGCA ACCGGTGCAT GTGATACCGG CGAAGGCTAT
GCGGCCGCGC GCGATATAGA CCACACCAAC GGCACAGTAC AAGGCGATCT AATTAGTTGG
ATACGCGACT TTCTATTTAA CGACATAGGC TTTAAGGGCC TGCGTTACGA TTACTCCAAA
GGTTACGACG CATATTACGC TGGCCTTTAC GCTAACGCGG TAAGCCCAAG TTTTTGTGTT
GGCGAAGTGT GGACAGATCT AAACATCAAC GATGTTAACC CGCACCGCCA GCAGTTGGTG
GATTTTGTAA GCGGCACCGG CGGCGCGTGT GGTGTATTTG ACTTCACAAC CAAAGGCATG
TTGAACGAAG CGTTGCACAA CAACGATTAC GGCCGTTTAA GCATTAACGG CGTGCCATCG
GGTGCAATTG GTTGGTGGCC ACAAAAAATG GTTACCTTTG TGGATAACCA CGATACTGGC
CCAAGCGAAG GCTGTGGCAT AGGTCAAAAC CATTGGCCGG TACCGTGCGA TAAAGTCATG
CAAGGCTACG CCTATATTTT AACGCACCCT GGTATTCCTA CGGTTTATTG GGCCCACGCT
TACGATTGGG GTATGTACGA TGCAATTAAA GCTTTGGTAG ATATTCGTAA ATCTGAAGGC
TTAACGTCTA CGTCTTCCGT TGATATTAAA GCGGCGCAAA ATGGTTTATA TGCTGCAGTT
ATAGATGGCA AAGTGGCCGT TAAAATTGGC CCCAACAGTT GGGCGCCTTC TGGTGCGAAC
TGGGAGCTGA AAGCTAGCGG TACAAATTAT GCCGTGTGGG TAATTGGCGA GCAGCCACCA
GCATCGCGCA CGGTAATATT TGTATATGGC CAAACACAGG CTGGCCAAGA TATGTTTATT
CGCGGTGGTA TAGATCACGG CTACGCAGCG GCAAACCTCG GTAAAAATTG CACCAGTAGC
AACTACGAGT GCGCCATTCC AATTATCCAC AATAATTTAA ACAACGCGAC AACCGCAGGC
TGGAAAGCTA ACGACAACTA CCTAGATTGG TACGGTGTTG AAGCTAGCCA AAGCAGTGCC
GCAGAGGGCA GTGCAGCAGA TTGGACAACC AATGTATGGC CTTCTTCTTG GGGTGCCGAG
CGCACGGTAG CGGTAGACGG CTACGGTGTA ACGCCGTTAA ACGTGTATGG GCAACACTAT
TGGATGCTAG ATGTAGAAAT GGACTGTTCG GCTACGGTTA ACGGTTGGTT TGAGCTAAAA
ACTTACATAA GTAATGGCCC GGGCTGGGAA GCCGATGTAA ATCAAAGTGG CACACCTTAC
GCATCGGGTA ACCACTTTGC CCAGTGTGGC AAAATAAATG TATTCTCGCG CGGCTCTTCA
AACGCCACGA TTGTAGATTT TTAA
|
|---|
| Protein sequence | MTNKLLLAAS FSAVLATAAA THAATEQNQS SSAVLLQGFH WNSHDYDWYS VMQANVNSID
NLGATHVWFA PVSDAASDEG YLPRELYDVT TNYGTEQQLR TLVASLNAKG IDSVADIVIN
HRVGTTDWAD FTNPTWGSWA VTCNDEWPGA TGACDTGEGY AAARDIDHTN GTVQGDLISW
IRDFLFNDIG FKGLRYDYSK GYDAYYAGLY ANAVSPSFCV GEVWTDLNIN DVNPHRQQLV
DFVSGTGGAC GVFDFTTKGM LNEALHNNDY GRLSINGVPS GAIGWWPQKM VTFVDNHDTG
PSEGCGIGQN HWPVPCDKVM QGYAYILTHP GIPTVYWAHA YDWGMYDAIK ALVDIRKSEG
LTSTSSVDIK AAQNGLYAAV IDGKVAVKIG PNSWAPSGAN WELKASGTNY AVWVIGEQPP
ASRTVIFVYG QTQAGQDMFI RGGIDHGYAA ANLGKNCTSS NYECAIPIIH NNLNNATTAG
WKANDNYLDW YGVEASQSSA AEGSAADWTT NVWPSSWGAE RTVAVDGYGV TPLNVYGQHY
WMLDVEMDCS ATVNGWFELK TYISNGPGWE ADVNQSGTPY ASGNHFAQCG KINVFSRGSS
NATIVDF
|
|---|
| |