| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0554 |
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| Symbol | |
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| ID | 3967897 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 674897 |
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| End bp | 675601 |
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| Gene Length | 705 bp |
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| Protein Length | 234 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637919617 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_526030 |
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| Protein GI | 90020203 |
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| COG category | [K] Transcription |
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| COG ID | [COG2378] Predicted transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 0.665291 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAAG CAGAGCGGTT ACTGCAAACC GTTAACCTGT TACGCAACAG GCGTACAGTA
TTAACGGCAA AACAAATTGC AGAACGTTTA GATGTATCCG AACGTACCGT TTACCGCGAC
ATTCAATCGC TTATGCTCAC AGGGGTGCCT GTGGAGGGCG AGGCCGGAGT GGGTTACCGT
ATTCAGCGCA ATTTTGAATT GCCCCCGCTA ATGTTCGATA AAAGCGAAGT AGAAGCATTG
TTACTTGGCG CACGCATGGT GCGCTCTTGG AGTGACAAGG CTTTGGCAGC CTCAGCCCAT
AGCGCACTCA ACAAAATACT GGCGGTACTG CCGCCAGACC TACGTGAATT AGAAGAAACA
TCCGCCATTC GAGTGCCGCA ATTCCAAGGG CAGAGTGGTG CGGCTAAATA CAGTGAGCGC
GTGCGCTTGG CAATAACCGC CAAACAAAAG CTGCTGTTGG AATATAGCGA TGTAAATCAA
ACCCCATCCC AGCGCCTTAT TTGGCCCTTG GGTTTGTTTT TTTGGGGCGC GGCTTGGACA
TTAGTGGCTT GGTGCGAATT GCGCGACGAC TTTCGTATAT TTCGTTTAGA TCGCATGCAA
AGTTGCACAC CGCAAAAAGA TTTTTTTAGC CCAAGCAAAA CGCAAAGCCT AGATGCCTAT
TTAGAAAATG TGCGCAAACA ATACGGCGAT TGCGGCTTGG AATAA
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| Protein sequence | MNKAERLLQT VNLLRNRRTV LTAKQIAERL DVSERTVYRD IQSLMLTGVP VEGEAGVGYR
IQRNFELPPL MFDKSEVEAL LLGARMVRSW SDKALAASAH SALNKILAVL PPDLRELEET
SAIRVPQFQG QSGAAKYSER VRLAITAKQK LLLEYSDVNQ TPSQRLIWPL GLFFWGAAWT
LVAWCELRDD FRIFRLDRMQ SCTPQKDFFS PSKTQSLDAY LENVRKQYGD CGLE
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