| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0521 |
|---|
| Symbol | |
|---|
| ID | 3968762 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 644639 |
|---|
| End bp | 645226 |
|---|
| Gene Length | 588 bp |
|---|
| Protein Length | 195 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637919584 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_525997 |
|---|
| Protein GI | 90020170 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0835] Chemotaxis signal transduction protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGACT CCCTACCGAA CTCACCTGAA AACGCCACCG ATGACGCTAG GGAGTCATCC
GCACTCGAAC ACCTTTCTGA GGCGCTCACA GCGTCTTTAG ACCCAACCCA ACTGCCCAGC
ATTGACCGAG GCCGCAAACG CACCTACGGC TTCGCTGCGC ACGGTATACA CTTTCTTTTA
CCGCAAGGGT TGTATTGCGA ACTACTCACA CAGCCCGCAA TTACTCCGCT GCCAAACTCG
CCTAAACATT TTTGTGGGTT AAGTAACGTT CGCGGCAACC TTGTGCCAAT TTACAACCTA
GGCGCACTAT CGGGCCAACA CGGGTTGAAC ACCCACCCTA AATTGGCTCT TATTTTAGGC
TCCATTGCGA CTGGCGCAGC GCTAGTGGTG GATGGCAACC CCAGCTCGAT AGAAACAGAG
CAAGCCACAA CGCTCAACAA AGACGACAGT ACCGCATTAT TCCAAAAGAC AGACTTGCCG
GATGTTATTT GGGAGGCCGT GACCGACACG CTAATGATTA ATAATACCCC CTGGCATCAA
CTCGACCCCA AAGTGTTGTT TACTCAGCTA AGCCGTTGGA CACACTAA
|
|---|
| Protein sequence | MQDSLPNSPE NATDDARESS ALEHLSEALT ASLDPTQLPS IDRGRKRTYG FAAHGIHFLL
PQGLYCELLT QPAITPLPNS PKHFCGLSNV RGNLVPIYNL GALSGQHGLN THPKLALILG
SIATGAALVV DGNPSSIETE QATTLNKDDS TALFQKTDLP DVIWEAVTDT LMINNTPWHQ
LDPKVLFTQL SRWTH
|
|---|
| |