Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0467 |
Symbol | |
ID | 3967985 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 569625 |
End bp | 570350 |
Gene Length | 726 bp |
Protein Length | 241 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637919530 |
Product | PAS/PAC sensor signal transduction histidine kinase |
Protein accession | YP_525943 |
Protein GI | 90020116 |
COG category | [S] Function unknown |
COG ID | [COG1385] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR00046] RNA methyltransferase, RsmE family |
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Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTATTC CCCGCATCTA TATCGACAAA CCGATTACCG CCAATGCAAA CCTAGACCTA GATGGCCCAA CGGCTCACTA CTTATTAAAA GTACTGCGGA TGGAAAGCGG GCGTGAACTT ATTTTATTTA ATGGTAAGGG CGGTGAATAC AGCGCGGTAA TAGAAAGCGC AGGTAAAAAA AATGTTTTCT GCAAAGTTGG TAAACACAAC ACCCGCGAAA GCGAAAGTAG CCTACAAACG GAATTAGCTA TTGGTATATC TCGGGGCGAC CGAATGGATT GGGTTTTGCA AAAAGCCACC GAGCTTGGCG TTAGCCGTAT AATACCGCTA TTTGCGGACC GATCTGAAGT TAAATTGAAA GGCGAGCGCC TAGAAAAGAA AATGCAACAT TGGCAGCAAA TACTCATCTC AGCCTGCGAG CAATGTACAC GTAACACCTT GCCAACATTA CTACCAGCTT GCCCTCTTGA TGAGTACTTA GCCTCGACAC AAGCCGAACA AAAGTTCGTG CTACATCACC GCACCCACAA AAAATTGCGT GACATAACCA AACCTAAGAG CGCAGCTCTA CTCATTGGCC CAGAAGGCGG CTTGACCGAT AACGAAATCC AAAATGCCGA ACGAAAAGGC TTTAATGCAT TAGCACTAGG CCCTCGAATA CTAAGAACAG AAACAGCCCC TATCGCAGCG CTATCTATTC TGCAATTTGT TTGGGGGGAT GTTTAA
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Protein sequence | MRIPRIYIDK PITANANLDL DGPTAHYLLK VLRMESGREL ILFNGKGGEY SAVIESAGKK NVFCKVGKHN TRESESSLQT ELAIGISRGD RMDWVLQKAT ELGVSRIIPL FADRSEVKLK GERLEKKMQH WQQILISACE QCTRNTLPTL LPACPLDEYL ASTQAEQKFV LHHRTHKKLR DITKPKSAAL LIGPEGGLTD NEIQNAERKG FNALALGPRI LRTETAPIAA LSILQFVWGD V
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