Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0406 |
Symbol | |
ID | 3965982 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 502403 |
End bp | 503767 |
Gene Length | 1365 bp |
Protein Length | 454 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 637919469 |
Product | DNA repair protein RadA |
Protein accession | YP_525882 |
Protein GI | 90020055 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1066] Predicted ATP-dependent serine protease |
TIGRFAM ID | [TIGR00416] DNA repair protein RadA |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.509389 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGCAAAGC AAAAAACCGG CTACGTATGT ACCGATTGCG GCGCAGATTA CTCCAAGTGG CAAGGACAGT GCGCCGAATG TGGCCAGTGG AATACCGTAC AAGAAGTGCG CTTGGGCGCG GCTACAAGTA GTCGCAGTGC AAGCCAAGCG GGCTACGCAG GGCAGGGTTT ATCTAAGGTT ACGCCCCTCG CCGAAATAGA TTTGGCCGAG TTGCCGCGTA TTGCCAGTGG TATGGATGAA TTAGACCGCG TACTGGGTGG CGGCTTTGTG CCCGGCTCGG TGGTGCTTAT TGGTGGCAAC CCTGGTGCGG GTAAATCAAC GCTGCTACTG CAAACTCTTT GTCATTTATC GCAAAAACAC CCTGCGCTAT ACGTAACCGG TGAGGAATCG CTGCAACAGG TGGCAATGCG CGCGCAGCGT TTAGGGTTAC CTACCGACAA ACTCCAGCTT TTATCTGCCA CCGATGTCGA TGCACTCTTG GCCAGTGCCG ACCAAGTTAA ACCCAAACTT ATGGTGGTGG ATTCTATTCA GGTAATGCAT CACGCCGATA TTCAATCTGC CCCAGGCAGT GTGTCGCAGG TGCGCGAATC AGCTGCAGCG CTCACTCGCT ACGCCAAACA AACCGGCACA GTGCTTATTT TGGTGGGACA TGTAACCAAA GATGGCAGCC TTGCCGGCCC GAAAGTGCTC GAGCACATTA TCGATTGCTC CATCATGATA GAAGGCTCTA ATGACAGTCG GTTTCGCACC TTGCGCGGCA GTAAAAACCG CTTTGGCGCG GTGAACGAGC TGGGGGTGTT TGCCATGACC GAGCAGGGCT TAAAAGAGGT GTCTAACCCG TCGGCTATTT TCTTGCAGCG CTCCGACGAA GTGGCCTCTG GCTCGGTAGT CATGGTGGTG TGGGAAGGCA CGCGCCCGCT GTTGGTCGAA ATACAAGGCT TGGTGGATAT GTCGAGCTTG GGTAACCCGC GCCGCGTTGC GGTAGGGCTA GAGCAAAACC GGCTGGCGAT GTTACTAGCG GTGCTGCACC GCCACGGCGG CATTATGGTT GGCGATCAAG ATGTGTTTGT AAACGTTGTG GGCGGTGTGA AAATTGTAGA AACCAGTGCC GACTTGGCGT TGTTGTTGGC GCTGGTGTCG AGCTTTAGGG ATCAACCCCT ACCGCGCGAC TTAGTGGTAT TTGGCGAAGT GGGCCTAGCG GGGGAGATTC GCCCCGTGCC CAGTGGCCAA GAGCGCCTGC GCGAAGCGGC CAAGCACGGC TTTAAAAAAG CAATCGTTCC CGCCAACAAC GTCCCGCGCG AACCTATCAA GGGGTTGGAA ATTGTCGCAG TCAAAAAACT AAGCGAAGCC CTAGAAGCCA TTTAG
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Protein sequence | MAKQKTGYVC TDCGADYSKW QGQCAECGQW NTVQEVRLGA ATSSRSASQA GYAGQGLSKV TPLAEIDLAE LPRIASGMDE LDRVLGGGFV PGSVVLIGGN PGAGKSTLLL QTLCHLSQKH PALYVTGEES LQQVAMRAQR LGLPTDKLQL LSATDVDALL ASADQVKPKL MVVDSIQVMH HADIQSAPGS VSQVRESAAA LTRYAKQTGT VLILVGHVTK DGSLAGPKVL EHIIDCSIMI EGSNDSRFRT LRGSKNRFGA VNELGVFAMT EQGLKEVSNP SAIFLQRSDE VASGSVVMVV WEGTRPLLVE IQGLVDMSSL GNPRRVAVGL EQNRLAMLLA VLHRHGGIMV GDQDVFVNVV GGVKIVETSA DLALLLALVS SFRDQPLPRD LVVFGEVGLA GEIRPVPSGQ ERLREAAKHG FKKAIVPANN VPREPIKGLE IVAVKKLSEA LEAI
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