| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0398 |
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| Symbol | |
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| ID | 3967606 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 493437 |
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| End bp | 495683 |
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| Gene Length | 2247 bp |
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| Protein Length | 748 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637919461 |
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| Product | DNA topoisomerase IV subunit A |
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| Protein accession | YP_525874 |
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| Protein GI | 90020047 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
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| TIGRFAM ID | [TIGR01062] DNA topoisomerase IV, A subunit, proteobacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.170842 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGAAT CCACAGTAGT ATACGATGCC GAAGAGCAAA TACCGCTCAA GCAGTTTTCC
GAAAAAGCGT ATTTGGATTA CTCCATGTAC GTTATTCTCG ACCGCGCCTT ACCCCACGTA
GGTGACGGCC TTAAACCCGT TCAGCGCCGC ATTGTTTATG CCATGAGCGA GCTGGGCTTA
AAGTCCACCG CCAAGTATAA AAAGTCCGCC CGCACCGTGG GTGATGTAAT CGGTAAGTTC
CACCCGCACG GCGACAGCGC CTCCTACGAA GCCATGGTTA TCATGGCGCA GCCGTTCTCG
TTTCGTTACC CACTGGTAGA TGGTCAAGGT AACTGGGGTT CGCAGGATGA CCCCAAATCG
TTTGCGGCTA TGCGATACAC CGAGTCGCGC TTGGCGGCGT TTAGTGATGT GTTGTTGGCC
GAGCTTGGCC AAGGCACGGT AGATTGGCAG CCCAACTTCG ACGGCACCTT AGATGAACCC
AAAGTGCTGC CGGCAAAAGT GCCCACCGTT CTACTAAACG GCACCACAGG TATTGCTGTG
GGTATGGCCA CCGATATACC GCCGCACAAT TTGCGCGAGT TGGTGAATGC AACAATTCAC
CTGTTGGAAA ACCCCAACGC TACCGTACCC GAATTGTGCG AGCACCTGTT AGGCCCAGAT
ATGCCTACCG AAGCCGAAAT TATTTCGCCG CGTGAAGACA TTATAAAAAT GTACGAAACC
GGCAAAGGCT CGCTAAAAAT GCGCGCAATT TGGACCAAAG AAGGTAACGA TGCGGTCATT
ACCGCTCTGC CTCATCAGGT AAGCGGTGCA AAAATTCTCG AGCAAATAGC CGCGCAAATG
CAGGCTAAAA AGCTGCCAAT GGTGGCAGAC TTGCGCGATG AATCCGACCA TGAAAACCCC
ACCCGTTTAG TGATAGTGCC GCGCTCTAAC CGCATAGACA TAGATGGCGT TATGAACCAC
CTGTTTGCCA CTACCGATTT AGAACGCAAC TACCGCGTTA ACCTCAATAT GATTGGTATT
AACGGCCGTC CAGGTGTGCG TTCGCTCGAT AAAATTCTTG GCGACTGGTT GAGCTTCCGC
ATGGTAACCG TGCGCCGTCG TTTGCAGCAC AGGTTGGATT GGGTAAATCG CCGTTTACAT
TTATTGGACG CAGCGTTAAT TGCTTTTTTA AACCTCGATG AAGTAATTGA AATTGTTCGC
ACCGAAGACA AGCCGCGCGA AGTGCTCATG CAGCGGTTTG ATTTAACCGA AGAGCAAGCC
AACTATATTT TAGATACGCG GTTACGCCAG TTGGCTCGTT TAGAGGAAAT GAAAATACGC
GGCGAGCAAG ACGAGTTGCA AAAAGAGCGC GACACCATAG AAAAAACGCT TGGCTCTGCG
CGCATGATGA AAACACTTAT CAAAAAAGAT ATGTTGCAGG TACTAAAAGA GCACGGCGAC
GAACGCCGCT CGCCAATTGT TACCCGCGAA GAGTCACAAG CATTTAGCGA AGACCAGTTG
CTAACTAGCG AACCGGTGAC CGTTGTGCTT TCAGAAAAAG GCTGGATACG CTCCGCCAAG
GGTCACGAAA TGGACCCCGC ATCGCTCAGT TATAAAGCCG GCGATGAATT TAAATTTGCT
TCGCGGGGCA AAAGTAATCA AAGCGTTATT TTAATTGATT CAACTGGTCG CAGTTACGCT
TTAGCTGCAC ACACGTTGCC GTCGGCACGT GGGCAGGGCG AACCTGTTAC CGGCAGACTA
AATCCTCCCA GCGGTGCCAC TATCGAAGGC ATGTTAATGG GCAGTGAAGA TCAGCGTGTG
CTGTTAGCTT CGGATGCCGG TTACGGTTTT GTGGGCAAGC TAGGCGATTT AGTGTCTAAA
AATAAAGCGG GTAAAGCTGC GCTAACGCTT CCTAAAGGTG CTGAAGTTTT ACCGCCCACC
GTGATAGAAG ATTTAGATAA CACCTGGCTT GCCGCCTTTA GCAACGAAGG TCGCTTATTA
GTATTTAAAG TTACCGAGCT GCCTGAGTTA GCGCGCGGTA AAGGCAATAA AATTATTAAT
ATTCCTTCTG CCCGCGTACA AAACCGCGAA GAGTTTGTAA TTGCTTTAGC CGTAGTGCAA
GCGAGCGATA CCTTGAAAGT GGTTTCGGGT AAGCGCCATT TAAATCTTAA GTTTAAAGAT
TTAGAGCACT ATATTGGCGA GCGCGGACGG CGAGGTAATA AATTGCCACG CGGCTTCCAA
AAGGTGGATG CTGTCGAATT ACTATAG
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| Protein sequence | MTESTVVYDA EEQIPLKQFS EKAYLDYSMY VILDRALPHV GDGLKPVQRR IVYAMSELGL
KSTAKYKKSA RTVGDVIGKF HPHGDSASYE AMVIMAQPFS FRYPLVDGQG NWGSQDDPKS
FAAMRYTESR LAAFSDVLLA ELGQGTVDWQ PNFDGTLDEP KVLPAKVPTV LLNGTTGIAV
GMATDIPPHN LRELVNATIH LLENPNATVP ELCEHLLGPD MPTEAEIISP REDIIKMYET
GKGSLKMRAI WTKEGNDAVI TALPHQVSGA KILEQIAAQM QAKKLPMVAD LRDESDHENP
TRLVIVPRSN RIDIDGVMNH LFATTDLERN YRVNLNMIGI NGRPGVRSLD KILGDWLSFR
MVTVRRRLQH RLDWVNRRLH LLDAALIAFL NLDEVIEIVR TEDKPREVLM QRFDLTEEQA
NYILDTRLRQ LARLEEMKIR GEQDELQKER DTIEKTLGSA RMMKTLIKKD MLQVLKEHGD
ERRSPIVTRE ESQAFSEDQL LTSEPVTVVL SEKGWIRSAK GHEMDPASLS YKAGDEFKFA
SRGKSNQSVI LIDSTGRSYA LAAHTLPSAR GQGEPVTGRL NPPSGATIEG MLMGSEDQRV
LLASDAGYGF VGKLGDLVSK NKAGKAALTL PKGAEVLPPT VIEDLDNTWL AAFSNEGRLL
VFKVTELPEL ARGKGNKIIN IPSARVQNRE EFVIALAVVQ ASDTLKVVSG KRHLNLKFKD
LEHYIGERGR RGNKLPRGFQ KVDAVELL
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