Gene Sde_0340 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_0340 
Symbol 
ID3966521 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp424155 
End bp424580 
Gene Length426 bp 
Protein Length141 aa 
Translation table11 
GC content48% 
IMG OID637919403 
Producthypothetical protein 
Protein accessionYP_525816 
Protein GI90019989 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000000466882 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.179324 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAATTA AACACTTAAT CGGCATGACT ATCTTCCTCG CTGGCACCTT GTTTAGCGTG 
CAAAGCTTGG CGGATATCGC AATTATCGTT CACCCATCCA ATGGCGCCGC ACTAGACGCA
GATGAAGTGA GCCGTATCTT TTTGGGTAAA GCAAAATCCT TCCCTGGTGG CGCTACCGCA
GTGCCAGTAA ACCAAGCAGA AGGCTCTATT GTGCGCACCG CTTTCGACGA TGGCATTATC
GGCAAATCGG CTAGCCAGCT TAAATCCTAC TGGTCCAAAC TGGTATTTAC CGGCAAGGGT
ACACCCCCAC AGGAAGTAAG CAGCGAAGAC GAAATTAAAA AGCTAGTTGC CTCTAACCCC
AATATGATTG GCTACATAGA TGCAGCCAAC GTGGATAGCT CGGTGAAAGT TGCATTAACT
TTCTAA
 
Protein sequence
MRIKHLIGMT IFLAGTLFSV QSLADIAIIV HPSNGAALDA DEVSRIFLGK AKSFPGGATA 
VPVNQAEGSI VRTAFDDGII GKSASQLKSY WSKLVFTGKG TPPQEVSSED EIKKLVASNP
NMIGYIDAAN VDSSVKVALT F