| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0297 |
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| Symbol | |
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| ID | 3965436 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 368829 |
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| End bp | 369395 |
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| Gene Length | 567 bp |
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| Protein Length | 188 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637919359 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_525773 |
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| Protein GI | 90019946 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00240758 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCAGAGG ATGAAGTGCC GGATGACAAA CAATTACTCG CGGCCATTGC GAGCGGCGAT
ACAGAAGCAA TAACGGTGTT TTATCAGCGC CACGAAGCGC GGGTATACCG TTATGCGCTG
GCAAAGGTAG GTGATAGTTT TGCCGCGGCA GACATACTGA ACGATGTAAT GATGCAGGTG
TGGCGCGCAG CGGCAAAATT TGAAGGCCGC GCAAAAGTAA CAACATGGTT GCTGGGTATA
GCCCACAACA AAGTGGTGGA TCACTGGCGC AAGGTAGGCG CGCGAGAATA CACCGAGCTA
GACGACAGTA TGGAAGATGA AAGCGCGAGC GGCGCGAACC CAGCGCAGGC AACCGAAGCC
GCCAGCGATG GCAAATTGTT GCACGCGTGT TTGGCAAAAC TTAAACCCGA GCACCGCGAA
ATTTTGCATT TGGTATTTTT CGAAGAGCTG GGCTACAGCG AAATAGCCAG CATAATTGAT
GTACCAGAAG GCACAGTAAA ATCACGCGTT TTTCACGCGC GTAACCTAAT GAAAAAACAA
TTGGCGAACG CCACGAGGGC GGCATGA
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| Protein sequence | MAEDEVPDDK QLLAAIASGD TEAITVFYQR HEARVYRYAL AKVGDSFAAA DILNDVMMQV
WRAAAKFEGR AKVTTWLLGI AHNKVVDHWR KVGAREYTEL DDSMEDESAS GANPAQATEA
ASDGKLLHAC LAKLKPEHRE ILHLVFFEEL GYSEIASIID VPEGTVKSRV FHARNLMKKQ
LANATRAA
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