Gene Sde_0293 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_0293 
Symbol 
ID3965432 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand+ 
Start bp363965 
End bp364576 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content52% 
IMG OID637919355 
ProductTetR family transcriptional regulator 
Protein accessionYP_525769 
Protein GI90019942 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones45 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones6 
Fosmid unclonability p-value0.000668888 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCGGGCG GTAGGCAGCG AGAGTTCGAC AAACAACAAG CATTAAGTGC AGCCATGCAT 
GTATTCTGGC AAAAAGGGTA TGTGGGCGCG TCGCTTGCCG ATTTAACCAG CGCAATGGGT 
ATTAACAAAC CCAGCATGTA CGCTGCATTT GGCAACAAAG AGCAGCTTTT TGTGCAGGCT 
ACCGAGCACT ACATGGCGGT GCACGCCGAG CCGCTTTTCC CTTTGTTGCA CACGCCTAAT 
CAAAGCCTTA AGCAGCGTGT TGGGGCCTAT ATGCGCGCGG TGGTGGCCGC TCAGTGCGCA 
GGCGAAACAC CGCTGGGGTG TTTTGTATCC CTATGTATTA ACGAGGCGGC AAGCCAAAGC 
ATGCCGCAAA GCGCGGTTAC GCTTATAGAG CAGGCCAAAG GTTATGCCGA AAATTACCTA 
ACTCAGCTGT TTAAAGATGA AATAACAGCA GGCAACCTAA GCCCACAAAC CCAACCCGCC 
ACTTTGGCAA GCTTGCTGGT AACCCTTATG CACGGCACCG CCGCCATGGC TCGCGGTGGT 
AAACGCTTCG AAGAACTCGA GCCACTTCTA GAAATAACCT TGCAGCAAGT TATATCAGGC 
TCGAATAGTT AG
 
Protein sequence
MAGGRQREFD KQQALSAAMH VFWQKGYVGA SLADLTSAMG INKPSMYAAF GNKEQLFVQA 
TEHYMAVHAE PLFPLLHTPN QSLKQRVGAY MRAVVAAQCA GETPLGCFVS LCINEAASQS 
MPQSAVTLIE QAKGYAENYL TQLFKDEITA GNLSPQTQPA TLASLLVTLM HGTAAMARGG 
KRFEELEPLL EITLQQVISG SNS