Gene Sde_0262 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_0262 
Symbol 
ID3966028 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp327392 
End bp328909 
Gene Length1518 bp 
Protein Length505 aa 
Translation table11 
GC content41% 
IMG OID637919322 
Productbacteriophytochrome-like protein 
Protein accessionYP_525738 
Protein GI90019911 
COG category[T] Signal transduction mechanisms 
COG ID[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.268371 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCAAAC AAGAATTAGA CAATATACGA AAGCGCTCTC CCGTATGGGA ATATTTTCTC 
ACGTTATTTG TATTGGTAAT TATTGGGGTG AATGCTTACT TGGCCTTTTC TACGGTAAAC
GATTTATCCC ACAGGCACCG CAGTATTACC AATACCGGTA ACGTAATTGT AGAGATTAAA
GAACTGAATC AAAGCTTACT GGCGGCCGAG CTAGGTGAGT TGGTTTTCTT ATTGGTAGAA
GACGATACCG AAGTTGATCC ATACCTGGCT GCACTCGAAG ATTTAGATCT GCATGTCAAA
TCGGTAAGGC ACCTTCGCAC AGAAATTCCA GGGCAAGCAG AAGATATCCG TTTACTTGTA
GATATGATTC GCCAGCGCAT TGCGCAGCTG CGTGCTGGTT TAGAGCTTTC TTTAGCAGAT
AAACACGAGC GAGCAATAAA TAAAATAACA ACAAGAAAAG GCGTTGAGAA TCAGAAAAAA
ATTGCAGATC TATTCGATAG AATAGAAACA AGAGAGTTTG CTTTACAGGG TAAGCTCTAT
TCGAAAATGG TGCAAAGCGA TAAAAAATCA CGCAATTTAA TTATTGCATT CTTAGTTATA
AGCAGCTTGT TAGTGGTCGG CGTGTTTGCC ATTCTTAAGC TTACCCTACG CCGCGAAGCA
GTCTATCGAG AAAAACTACA AAAGCGTGCC GATGAGCTTG AAGACAAAGT GCGTCAGCGC
ACTCAGGAAA TAACCCTCTA TTCCGAAGAG CTAGCTCGCA GTAATCAAGA GCTAGAAGAT
TTTGCTTTTG TTGCATCCCA TGATCTGCAA GAGCCCCTTA GAAAAATTTG CACCTTCTCT
GACCGTATGA ATAAAAAGTA TGCCGAGCAA TTAGATGAGA AAGGCCGAGA TTACCTTGTT
AGGCTTAATG GCGCTGCTAC AAGAATGTCT GTACTCATTC ACAACTTACT AGAGTTTTCT
CGTATTCGAA CACGGGGTAA ACCGTTTGTA ACAGTAGATT TAGACCAATT AATTGCAGTC
ATAATAGATG ACCTAGAGAT AGCAATAGAG ACAAACCAGG CGGTAATTAG CATAGATGCC
TTACCTTCTA TTAAGGCTGA TGAAAGTCAA ATGACCCAGC TTTTCCTAAA TCTTTTATCT
AATGCAATTA AGTTTAGAAA GCCTGATGTA ACGCCCATTG TGCAAGTGCG TTATGCATTA
GTACAAAAAG AAGCTATGAA TACCCAGCTT AGTTTTCACG AGATTCGTGT GCAAGATAAT
GGTATTGGGT TTGATATGGA TTACAAAGAC AAAATATTTG TTCCATTTCA ACGTTTGCAT
GCACGCGACG AATATCAAGG TACGGGTATT GGCCTAGCGG TATGTAGACG AATTGTTGAA
CGCCACGGCG GTACTATAGA TGTGGAAAGC GCTGTGGGCG AAGGCTCGAC GTTTATCATT
CATATTCCGG TTGTAAGTAT AGATATGGAA GGTGATATAT CTGAGGCAAT TGAAAAAATA
GAAACACAAA CAGAATAA
 
Protein sequence
MTKQELDNIR KRSPVWEYFL TLFVLVIIGV NAYLAFSTVN DLSHRHRSIT NTGNVIVEIK 
ELNQSLLAAE LGELVFLLVE DDTEVDPYLA ALEDLDLHVK SVRHLRTEIP GQAEDIRLLV
DMIRQRIAQL RAGLELSLAD KHERAINKIT TRKGVENQKK IADLFDRIET REFALQGKLY
SKMVQSDKKS RNLIIAFLVI SSLLVVGVFA ILKLTLRREA VYREKLQKRA DELEDKVRQR
TQEITLYSEE LARSNQELED FAFVASHDLQ EPLRKICTFS DRMNKKYAEQ LDEKGRDYLV
RLNGAATRMS VLIHNLLEFS RIRTRGKPFV TVDLDQLIAV IIDDLEIAIE TNQAVISIDA
LPSIKADESQ MTQLFLNLLS NAIKFRKPDV TPIVQVRYAL VQKEAMNTQL SFHEIRVQDN
GIGFDMDYKD KIFVPFQRLH ARDEYQGTGI GLAVCRRIVE RHGGTIDVES AVGEGSTFII
HIPVVSIDME GDISEAIEKI ETQTE