| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0253 |
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| Symbol | |
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| ID | 3966019 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 316464 |
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| End bp | 317303 |
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| Gene Length | 840 bp |
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| Protein Length | 279 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637919313 |
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| Product | peptidyl-prolyl cis-trans isomerase |
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| Protein accession | YP_525729 |
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| Protein GI | 90019902 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0652] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family |
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| TIGRFAM ID | [TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.0866934 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.441111 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTAAAT ATTTAGCTTC AATTAGCCTA TTCCCCAAAT ATAAAACCAC TATCGCCCGC
AACGGCAAAC TCGCTTGCGC CTCTGCTTTA CTTAGCCTAT GCGCTCTGCA GGCTCAGGCA
ACAACGGTGC AGTTTCAAAC TTCACTGGGT GATTTTGAAG TAAACCTCTA CGATGAACAC
ACGCCAATTA CCGTAGAGAA TTTTTTGGCC TATGTTAACG CCGGTAGCTA TACCGACTCG
ATTATTCACC GCTCTGTAGA TAACTTTATA GTACAGGGTG GTGGCTACAC TTGGGAACAG
GACGAGAACC CAGCGCGCAT TGAAACAAAC CCCGCCATAT TAAACGAACC TGTTTACTCT
AACGTAGCAG GCACTATAGC TATGGCTAAA ACTGGCAACA ATGTTAATAG CGCTACCAGC
CAGTGGTTTT TTAACCTTAA AGATAATGGC GCAAATTTAG ATATTCAGAA TGGCGGCTTT
ACGGTATTTG GCCACACCGA TGCAGCAGGC CTTGCTATTT TAGAAAGCAT CAGTGATTTA
CCCGTGTACT CCTTCCAAAA TTCATTCGAA AGCATGCCAC TAATGGACTA CACCACCGAC
GACGCTAACA ATCAGGTGCC GGTAGAGTAT GAACACGCAG TGAAAATTTA CGCCATTACC
ATATTGGATG CGACGGTAGA CACGCTAGGC AATGAAACAC CCGTAGAGAA CGACCGAATA
GACAGCTATG AGCCACCTTC CAATTCTAAT GGTGGTAGTG GCGGTGGTTC GCTCACTTTA
CTTGGCTTAC TTGGCCTTAC TTGTTTAGGT TTGGTACGCA GAAAGAGAAC ACCACGCTAG
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| Protein sequence | MIKYLASISL FPKYKTTIAR NGKLACASAL LSLCALQAQA TTVQFQTSLG DFEVNLYDEH
TPITVENFLA YVNAGSYTDS IIHRSVDNFI VQGGGYTWEQ DENPARIETN PAILNEPVYS
NVAGTIAMAK TGNNVNSATS QWFFNLKDNG ANLDIQNGGF TVFGHTDAAG LAILESISDL
PVYSFQNSFE SMPLMDYTTD DANNQVPVEY EHAVKIYAIT ILDATVDTLG NETPVENDRI
DSYEPPSNSN GGSGGGSLTL LGLLGLTCLG LVRRKRTPR
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