| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0249 |
|---|
| Symbol | |
|---|
| ID | 3968091 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 313116 |
|---|
| End bp | 313673 |
|---|
| Gene Length | 558 bp |
|---|
| Protein Length | 185 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637919309 |
|---|
| Product | sigma-24 (FecI-like) |
|---|
| Protein accession | YP_525725 |
|---|
| Protein GI | 90019898 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 50 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.58233 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCAAGA TTCTTTCGTT TTTTAAGCGC CCAAGCCGCA ATAATAGCGA CTTCGAAGCG
TTAGTGGCCC CCTATATGGC GGCGCTGCAT CGCCAGGCGT TTAAATATGC CGGTAACGAA
AGTGAAGCCG AGGACTTATT GCAGGAAGTG CTAATAGAGG CCTACCAGCG AATAGATGCG
TTGCAGGCTG CGCCTATGCC ATTGGCTTGG TTAACGCGCT GCTTGTATCA CCGTTTTGTG
GATGCTTATC GCAAACAAAA AGCTCGCCCC GCGCTAGAAG ACATAGACGC ATTACATCTA
CGCGATGAGC CTCAGGCAGC TGGCACACCG GAAGCGCACT ACTGGCACAG TCAGGTTTTA
AAAAGTTTGA CACTGCTAAG CCCAGAGCAG CGCATGGTTG TTAGCCTGCA CGATATGGAA
GGCTATACGC TAGTCGAGTT GGCTAATATT GTAGAAATGC CCTTGGGTAC GCTTAAATCC
CATTTGCACC GCGCGCGAAA AATTCTACAA CAGGAATTTA AACTGCAACC TTTTCAGCCT
GCAACACGTT ATAAGTAA
|
|---|
| Protein sequence | MSKILSFFKR PSRNNSDFEA LVAPYMAALH RQAFKYAGNE SEAEDLLQEV LIEAYQRIDA
LQAAPMPLAW LTRCLYHRFV DAYRKQKARP ALEDIDALHL RDEPQAAGTP EAHYWHSQVL
KSLTLLSPEQ RMVVSLHDME GYTLVELANI VEMPLGTLKS HLHRARKILQ QEFKLQPFQP
ATRYK
|
|---|
| |