Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0237 |
Symbol | dapF |
ID | 3968079 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 296305 |
End bp | 297138 |
Gene Length | 834 bp |
Protein Length | 277 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 637919297 |
Product | diaminopimelate epimerase |
Protein accession | YP_525713 |
Protein GI | 90019886 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.142779 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGACTTC GCTTTACCAA AATGCACGGC CTAGGCAACG ACTTTGTAAT GATCGATGCC ATAAGCCAGC GCGTCACCAT TACCCCAGAG CGAGCGCGCC AACTGGCCGA CCGCCATTTT GGTGTGGGCT GCGATCAAGT ATTGGTTGTA GAAACACCCG ATTCCCCCGA CGCCGATTTT AAATACCGCA TTTTTAATCA CGATGGCAGT GAAGTAGAAA ACTGTGGCAA CGGCGCCCGC TGCTTTGCGG TGTTTGTGCG GCAGCGCGGA CTAACGGCAA AAAGCGTTAT TACCGTAGAA ACAGCCGTGG GCCGCATGGT GTTACATGTA CAAGAAGACG ATCAAGTTAC TGTCGATATG GGCGCACCTA TTCTTAGCCC CGCCGATATT CCCCTCGCAG CGCCGCAGCA GGCAACCAGT TATACACTGC CAACGCAAGG CGCAGGCGAT ATAACAATTG GTGCCGTTTC TATGGGCAAC CCCCATGCGG TGTACTGTGT TAACGACTGC AAAACCGCGC CGGTAGAAAC CCTCGGCCCA GAAATAGAAG CCCACCCTCA CTTCCCTAAA AAAGTGAATG CCGGCTTTAT GCAGGTAGTT AGCCCCAGCG AAATTAACCT GCGCGTATAC GAGCGCGGCG CAGGCGAAAC CTTAGCTTGC GGGACCGGTG CGTGTGCCGC TGTGGTTGCT GGGCGTTTGC AGGGCTTGCT TGAAAACACC GTAAAAGTAA ACCTGCCTGG CGGCAGCCTT TCTATAACGT GGGAAGGTGT AGACAGCCCA GTAATGATGA CCGGGCCTGC CACCACGGTA TTTCATGGAC AAGTTAAGAT ATGA
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Protein sequence | MRLRFTKMHG LGNDFVMIDA ISQRVTITPE RARQLADRHF GVGCDQVLVV ETPDSPDADF KYRIFNHDGS EVENCGNGAR CFAVFVRQRG LTAKSVITVE TAVGRMVLHV QEDDQVTVDM GAPILSPADI PLAAPQQATS YTLPTQGAGD ITIGAVSMGN PHAVYCVNDC KTAPVETLGP EIEAHPHFPK KVNAGFMQVV SPSEINLRVY ERGAGETLAC GTGACAAVVA GRLQGLLENT VKVNLPGGSL SITWEGVDSP VMMTGPATTV FHGQVKI
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