| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0228 |
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| Symbol | |
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| ID | 3967079 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 288742 |
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| End bp | 290040 |
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| Gene Length | 1299 bp |
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| Protein Length | 432 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637919288 |
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| Product | ABC-type branched-chain amino acid transport system permease component-like |
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| Protein accession | YP_525704 |
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| Protein GI | 90019877 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR03408] urea ABC transporter, permease protein UrtC |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.836611 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAATA CAATGATCTA TAAATTAATC CAGAACGATA CATTAGGCCG ATACGTATTG
GCTGCACTGT TTGCACTTAC CGTGCTTGTG CCGTTATCCA ATATATTAAT GCCCGAAGGC
TCATTTTTAC ATGTGCCTAC TTACACCATG ACCCTAATAG GTAAATACCT GTGCTATGCA
TTATTAGCAT TAGCGTTAGA TTTAGTGTGG GGTTATTGCG GTATTTTAAG TTTGGGCCAC
GGTGCTTTTT TTGCACTTGG TGGATACGCC ATGGGCATGT ACCTAATGCG TCAAATTGGC
GATAGAGGCA TGTATGGCAA CGCCGAGCTA CCCGACTTTA TGGTGTTTTT AAATTGGCAA
GAGCTACCTT GGTATTGGAT GGGCTTTGAT AATTTCGGCT TTGCCATGTT AATGGTGTTG
TTGGTGCCGG GCTTACTTGC CTTTGTGTTT GGTTGGCTGG CGTTTCGCTC GCGCGTGACA
GGGGTATACC TTTCTATTAT TACTCAGGCC ATGACCTATG CATTAATGCA GGCTTTCTTT
TTGAACGATT TCGGTTTTGG CGGCAATAAC GGCCTTACGG ATTTTAAAGA TATTCTCGGT
TTTGATATTC AAGCAAATGC CACCCGTATA ACGCTATTTA TGTTATCTGG TGGAGCTGTT
ATTTGTGCCT ATTTATTGTG CCGGTTTATA ACCACCAGTA AGTTTGGCCG TGTGCTTGTA
TCAATACGCG ATGCAGAAAG CCGCAGCCGC TTTTTAGGCT ACAGAGTAGA GCATTACAAA
TTATTTGTGT TTGTGTTGTC TGCTGTGTTG GCCGGTATTG CTGGCGCATT GTTTGTGCCG
CAGGTTGGCA TTATTAACCC CGGTGAATTT AACCCTGTTA ACTCTATCGA AATTGTTATT
TGGGTGGCGC TCGGTGGGCG TGGTACTTTG TACGGTGCTG TTATTGGTGC TGTGGTAGTT
AACTACGTTA AATCGTTTTA CACCGGTGCT ATGCCAGAAA TGTGGCTGTT TATGTTGGGC
GGAATTTTTG TTGTTTCCAC CATTTATGCC AATGCCGGCG TAATTGTTGG GGTTATTATT
AGTGTTGTGG CGTCGAGCTT TTATATGCTG CTATGTAAAT TATTTGGCAT GGATATAAAT
GGCTTTGTCA TGCTGATATT TGCTTTGGTT AGCTTGTACG GCTGTGCCAA GTACTTCGAT
AATTTAGTTG CCTGGTTAAA GCCAAAATTT CTCGCCCTTG GTTTTGTTGA AAAGCTATTG
GCGAATAAAG CGCAAGCGGT AACCGAGGAG GCCAAATAA
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| Protein sequence | MKNTMIYKLI QNDTLGRYVL AALFALTVLV PLSNILMPEG SFLHVPTYTM TLIGKYLCYA
LLALALDLVW GYCGILSLGH GAFFALGGYA MGMYLMRQIG DRGMYGNAEL PDFMVFLNWQ
ELPWYWMGFD NFGFAMLMVL LVPGLLAFVF GWLAFRSRVT GVYLSIITQA MTYALMQAFF
LNDFGFGGNN GLTDFKDILG FDIQANATRI TLFMLSGGAV ICAYLLCRFI TTSKFGRVLV
SIRDAESRSR FLGYRVEHYK LFVFVLSAVL AGIAGALFVP QVGIINPGEF NPVNSIEIVI
WVALGGRGTL YGAVIGAVVV NYVKSFYTGA MPEMWLFMLG GIFVVSTIYA NAGVIVGVII
SVVASSFYML LCKLFGMDIN GFVMLIFALV SLYGCAKYFD NLVAWLKPKF LALGFVEKLL
ANKAQAVTEE AK
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