| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0227 |
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| Symbol | |
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| ID | 3967078 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 287126 |
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| End bp | 288739 |
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| Gene Length | 1614 bp |
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| Protein Length | 537 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637919287 |
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| Product | Fis family transcriptional regulator |
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| Protein accession | YP_525703 |
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| Protein GI | 90019876 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
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| TIGRFAM ID | [TIGR03409] urea ABC transporter, permease protein UrtB |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.903114 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATAC TAATCAAAAC CGCTTTGCTC GTTTTGTCTT TGACGATGGC CGTAAGTGCT
TGGTCACTGA CTTTTGACGA GTTGGTAAAT AATCTCAATG CGCCTTCCTT TAGCGATAAA
TCGGAAGCGG TGCAAGAACT ATCTAAGTTA TCCGACCCGC GCGTGTTGCC AGTACTGATG
GCCATGTCAG ACGGCTCGCT ACACTATCGT AAATCAGACA ACAAAATTGT TATCGCTACT
GAATCAGAAA ATGGTTATAG GCTAACCGAC CCACTTACCG ACGAAGACCT CGGTGAAGTA
GGCCGTCGCG ATAGCAAAAA AATTCGCACC AACAACAAGT TGCGTGGCGA AATAAACACT
CAGGTTGCCG CACTGCGTTT ACGCAACCCC AATAAAGCTA TTCGCATTCA ATCTGCGCGA
GACCTTATTA AAAACCCTAC CCCAGCATTG CGTGAGGTAC TGGTAGAAGC TAAAGAGGCC
GAAACAAGTG CGCAGGTAAA AGAGCTAGTG AGCATAGCTC TAGCGCGTAT AGATATTAAT
AGCAGCGATC AGGAGCTGCG TTTAGCTGCC GTAGATGCCA TGGGCAACTC GGTAGAAACT
GAAGCGGTGG CAGAATTGCG CCGCATATTA GAAAAAGATG AAAATGGTAA CTACCTAGAG
CAAGACGAAA AGGTAACCAC CTTAGCCGCA ACAAAGGTAG AGTGGGTAGA TACTAAGCTT
GCCTTCTTTG GCTTTACAGA AAATGTTGTA TTTGGTTTAA GCCTTGGTTC TGTATTGTTG
TTAGCGGCCA TTGGTTTAGC AATTACTTTT GGTGTAATGG GTGTAATTAA CATGGCCCAC
GGCGAAATGA TAATGCTAGG GGCTTACACA ACTTTTGCGG TTCAGCAGTT TTTTCCTGGC
CTAATTGAAT ACTCTTTATT TATTGCCATT CCAGCGGCCT TTCTGGTGTC GGGTTCGGTA
GGGGTAGTCA TAGAGCGCAC CGTCATTCGC CATTTGTACG GTCGCCCATT AGATACGCTG
CTGGCTACCT TCGGCATTAG TTTGTTGTTA CAGCAAGCGG TGCGTGTATA TCACTCCAAT
AACGTACCGG TTATTACCCC CGAGTGGATG TCCGGTTCGT GGGTGGTAAA CGGCGCGCTT
AGCTTTACCT ATAACCGTAT TTATATATTT ATATTTGCTC TATTTGTATT GGGTATGTTG
GCGCTGCTAT TGAAAAAAAC CTTATTGGGT TTACAAATGC GCGCAGTAAC TCAAAACCGC
GCTATGGCAA ACTCTATGGG TATTCGCTCT AGCCATGTAG ATGCACTTAC CTTTGGTTTG
GGGTCGGGTA TTGCCGGTAT TGCCGGTGTG GCCATTAGCC AAATTACCAA TGTGGGCCCC
AACCTTGGCC AAGGTTTTAT TATCGATTCT TTTATGGTGG TTGTATTTGG CGGGGTAGGT
AACTTACTGG GTACTTTCTT TGCGGCAATG GGTTTGGGGG TTGTTACTAA ATTCCTAGAG
CCAGAAGTTG GCGCAGTTGT AGGTAAGATT ATGGTGCTTA TTTTCATTAT CTTGTTTATT
CAATGGCGGC CGCGCGGTTT ATTCGCACTT AAAGGCCGGT TTGTGGAGGA TTGA
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| Protein sequence | MKILIKTALL VLSLTMAVSA WSLTFDELVN NLNAPSFSDK SEAVQELSKL SDPRVLPVLM
AMSDGSLHYR KSDNKIVIAT ESENGYRLTD PLTDEDLGEV GRRDSKKIRT NNKLRGEINT
QVAALRLRNP NKAIRIQSAR DLIKNPTPAL REVLVEAKEA ETSAQVKELV SIALARIDIN
SSDQELRLAA VDAMGNSVET EAVAELRRIL EKDENGNYLE QDEKVTTLAA TKVEWVDTKL
AFFGFTENVV FGLSLGSVLL LAAIGLAITF GVMGVINMAH GEMIMLGAYT TFAVQQFFPG
LIEYSLFIAI PAAFLVSGSV GVVIERTVIR HLYGRPLDTL LATFGISLLL QQAVRVYHSN
NVPVITPEWM SGSWVVNGAL SFTYNRIYIF IFALFVLGML ALLLKKTLLG LQMRAVTQNR
AMANSMGIRS SHVDALTFGL GSGIAGIAGV AISQITNVGP NLGQGFIIDS FMVVVFGGVG
NLLGTFFAAM GLGVVTKFLE PEVGAVVGKI MVLIFIILFI QWRPRGLFAL KGRFVED
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