| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0226 |
|---|
| Symbol | |
|---|
| ID | 3967077 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 285661 |
|---|
| End bp | 286971 |
|---|
| Gene Length | 1311 bp |
|---|
| Protein Length | 436 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637919286 |
|---|
| Product | urea/short-chain amide ABC transporter, periplasmic urea/short-chain amide-binding protein |
|---|
| Protein accession | YP_525702 |
|---|
| Protein GI | 90019875 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | [TIGR03407] urea ABC transporter, urea binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.867108 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGACCA CGATGAAAAA ATTAGTAAAA AAATCTGGGG TGGCATTAGG GGCAGCAGTA
ATGGCCTTGG GTGCATACAC CGCTCAAGCG GCAGACACTA TTAAAGTTGG TGTTCTACAT
TCATTAACCG GCACTATGGC TATCAGCGAA ACAACACTAA AAGATACAGT GTTAATGATG
GTTGAAGAGC AAAACAAAAA AGGCGGCTTG CTAGGTAAAA AACTAGAAGC AGTAGTAGTA
GACCCTGCGT CTAACTGGCC TTTGTTCGCA GAAAAAACTC GCGAACTTTT AGAGAAAGAA
AAAGTAGATG TTATTTTCGG CTGTTGGACA TCTGTATCAC GTAAATCTGT TTTGCCAGTA
ATTGAAGAGC TAAACGGTTT ACTTTTCTAC CCAGTACAGT ACGAAGGCGA AGAGTCATCT
AAAAACGTTT TCTACACTGG TGCTGCGCCC AACCAACAAG CTATTCCTGC TGTAGATTAC
CTGATGAGCG AAGATGGCGG CTCAGTTAAG CGTTGGGTAC TTGAAGGCAC CGATTACGTT
TACCCACGTA CCACCAACAA AATTCTTGAG CAATACTTAA TTAGTAAAGG CGTTGCCAAA
GAAGATATTT CTATTAACTA CACGCCATTC GGTCACGCAG ATTGGCAAAC CCGTGTAGCA
GAAATTAAAA AGTTCGGTTC TAAAGGAAAG AAAACCGCCG TTGTTTCTAC CGTAAACGGT
GATGCAAACG TACCTTTCTA CAAAGAATTA GCTAACGCTG GTATTTCTGC AGAAGATATT
CCTGTAGTAG CGTTTTCTGT TGGTGAAGAA GAGCTATCTG GTTTCGACAC TGCACCTCTT
GTTGGCCACT TGGCTGCTTG GAACTACTTT ATGAGCGTAG ATTCCAAAGC AAACGACGAG
TTTATTGCTG CATGGCATAA GTTTATTAAA GACGATAAGC GCGTAACCAA CGACCCTATG
GAAGCGACTT ACATCGGCTT TAAAGCGTGG GCCAAGGCTG TAGAAAAAGC GAAGAGCACC
GAAGTAGATA AAGTGCGCCC AGCTATGTAC GGTATTGAAG TTGCTAACCT TACTGGCGGT
ATCGCTAAAG TATTACCTAA CCATCACTTC ACTAAGCCTG TATTAATTGG CGAGATTCAA
TCAGACGGTC AATTTGAAAC TGTTTGGGAA ACCGAAGCCG AAGTACCAGG TGATGCATGG
ACTGACTTTT TACCAGAAAG TGCAAAAATC ATCTCTGACT GGCAGAACCC TGCTGTCAAT
TGCGGTAACT ACAATACCGA AACCAAAAAG TGTTCTGGTC AAAACTTCTA A
|
|---|
| Protein sequence | METTMKKLVK KSGVALGAAV MALGAYTAQA ADTIKVGVLH SLTGTMAISE TTLKDTVLMM
VEEQNKKGGL LGKKLEAVVV DPASNWPLFA EKTRELLEKE KVDVIFGCWT SVSRKSVLPV
IEELNGLLFY PVQYEGEESS KNVFYTGAAP NQQAIPAVDY LMSEDGGSVK RWVLEGTDYV
YPRTTNKILE QYLISKGVAK EDISINYTPF GHADWQTRVA EIKKFGSKGK KTAVVSTVNG
DANVPFYKEL ANAGISAEDI PVVAFSVGEE ELSGFDTAPL VGHLAAWNYF MSVDSKANDE
FIAAWHKFIK DDKRVTNDPM EATYIGFKAW AKAVEKAKST EVDKVRPAMY GIEVANLTGG
IAKVLPNHHF TKPVLIGEIQ SDGQFETVWE TEAEVPGDAW TDFLPESAKI ISDWQNPAVN
CGNYNTETKK CSGQNF
|
|---|
| |