Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0179 |
Symbol | |
ID | 3967963 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 222279 |
End bp | 223445 |
Gene Length | 1167 bp |
Protein Length | 388 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 637919238 |
Product | AraC family transcriptional regulator |
Protein accession | YP_525655 |
Protein GI | 90019828 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.0264145 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTAAACT TTTATAAAAG TACTGCTTTA TCGTTTTTTG CGTTGGTTCT GTTAACTGCA GCATGGGTGT GGCTGTGCAA TAGCAAAATG GAATTGGTTC ACGAGCTGCT TCCCGCAGAT TCGAGTACAA TTCCTTGGCA CTTTCATGCA CTTACTGATA TTGAAAAAGG AGGAAGTTCT TCCATTCAAA TTAACGATTC CGAACAAACC ATTAACTACA CATACGTACT CACCGACAAA ATAACATACC CCCATGCCAC AGTATTTATT GCCTTCGACC TTCTGAATAA TGCAGCGCAC TACGTTGACC TGCGCCGCTA TTCAAAAGCT GCGTATAAAT TAAAGTGCAA TCCAGAAAAC ATCTTATCGC TGCACCTCCA CACTTTTGAT CCAAAGGTTA CACAGGTGTC TAATTTATCT AGCTTTCGCA TATCTGAGAG TTTTGGCCAC TGCGGTGAAC AATGGACCGA AATTGAAGTC GATCTACACC ATCTCAACGT ACCCGCTTGG TGGCTGAACC AATTTGCGCT TAATAATTCA GAACAGAGCT ACCAATTGGA GCAGGTGCTG GCATTTTCTA TCGGCGCGTC CAAACAAGGT CCAATAAATA CACCTGCACA AGTAAGTGTA CACAGGCTCA CTTTGTACGG GCAGGATACT CGTTGGTTTT GGTTGGCATT GTTTGTAACA GTAATACTTT GGTTCTCGGC CATTACCGTT ATGTTAAGAG CCTACACCAA AGCATTAACA AAAGACGTGC GCAAGAGAAT GAAGCAGAGC CTGCCCCTGT TAGCATTTAA AGATATATCG ATCGAACCGC TAAAAGAAAA CTCGCAACTG ACTATTTTAC TGCGATTTAT AGCAACTGCT TACAATATCC CAGAGATTAG CCTAGAGTAC ACGTCTGCTA AAACTGGTAT AGATCGCAAT ACCATAAATA GGCTTATGCG TGCTGAACTA GGCTTAACAT TTAATGCCTA CGTAACCAAG CTTCGAATGG TAGAAGCCGC CCGCATCCTC CAGTGCGAAG GAGACATTCA AGTGACAGAA TTAGTCTATA AGCTAGGCTT CAAAAGTGTT GCTCACTTTT ACAAACTATT CAAGGATGAA TATGGTTGCA GCCCCAATAA ATTTAAGACC ATCCAAACAG AGGCGTTGAC AAGATAA
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Protein sequence | MLNFYKSTAL SFFALVLLTA AWVWLCNSKM ELVHELLPAD SSTIPWHFHA LTDIEKGGSS SIQINDSEQT INYTYVLTDK ITYPHATVFI AFDLLNNAAH YVDLRRYSKA AYKLKCNPEN ILSLHLHTFD PKVTQVSNLS SFRISESFGH CGEQWTEIEV DLHHLNVPAW WLNQFALNNS EQSYQLEQVL AFSIGASKQG PINTPAQVSV HRLTLYGQDT RWFWLALFVT VILWFSAITV MLRAYTKALT KDVRKRMKQS LPLLAFKDIS IEPLKENSQL TILLRFIATA YNIPEISLEY TSAKTGIDRN TINRLMRAEL GLTFNAYVTK LRMVEAARIL QCEGDIQVTE LVYKLGFKSV AHFYKLFKDE YGCSPNKFKT IQTEALTR
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