| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0123 |
|---|
| Symbol | |
|---|
| ID | 3967577 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 155086 |
|---|
| End bp | 155820 |
|---|
| Gene Length | 735 bp |
|---|
| Protein Length | 244 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637919182 |
|---|
| Product | sortase (surface protein transpeptidase)-like |
|---|
| Protein accession | YP_525599 |
|---|
| Protein GI | 90019772 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3764] Sortase (surface protein transpeptidase) |
|---|
| TIGRFAM ID | [TIGR01076] LPXTG-site transpeptidase (sortase) family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.592516 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTATGG TGGATTGGCG AGCAATTAAA CAAAAGTGGT TGTGGGGTTT GGTAATAGTG
GGGCTGTTAT TGTGCGGCAA CAGCATGTGG GTACACGCAA AGGCCACACT CGCGCAGCAC
CTTATTGCCA GCGCGTGGCA GCAAAGCTTG GCCGACGGCA AACCCCACAA GCCGTGGCGC
TGGGCAGACT CGTGGCCAGT GGCGCGCTTA AAAGTACCCG CCACAGGGGC AGACCTTTAC
GTATTGGCCG GCGCCCACGG CACAGCCCTC GCATTTGGCC CGGGCCATAT GGATGGCACC
GCGTTGCCGG GTGCCAGTGG CACCAGCGTA GTAGGCGGCC ATCGCGATAC CCATTTTCAG
TTTTTGCAAA ATCTGCAGGC GGGCGATTGG GTGCTGGTGC AACAACCCAA CGCCAAGTGG
CATTCGTATC AAATTCAAAC CCAGCGCATT GCCGATATTC GCAAAGGCGG GTTAACCCTG
CCCGCGCAAG GCGACTGGCT TTACTTGGTA ACCTGTTACC CGTTTAACAA TTGGAAGGCC
GGTGGCAGCG AGCGCTATGT AGTAGAAGCC CGCCGCGTAC AGGCAAACCA AATAAGCGGC
AAAACAGCCG AAGCTGATGC CAACCAGCCC ACAACACCTA CACAGGTTCC GGCGCAACTG
AATGTGCTTA CTAAATGGCA AACGGGGTAT TACAGCAGTC GCGTGGATGC TAGGTTGGCA
AGTGCTCACT TTTAA
|
|---|
| Protein sequence | MVMVDWRAIK QKWLWGLVIV GLLLCGNSMW VHAKATLAQH LIASAWQQSL ADGKPHKPWR
WADSWPVARL KVPATGADLY VLAGAHGTAL AFGPGHMDGT ALPGASGTSV VGGHRDTHFQ
FLQNLQAGDW VLVQQPNAKW HSYQIQTQRI ADIRKGGLTL PAQGDWLYLV TCYPFNNWKA
GGSERYVVEA RRVQANQISG KTAEADANQP TTPTQVPAQL NVLTKWQTGY YSSRVDARLA
SAHF
|
|---|
| |