| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0104 |
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| Symbol | |
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| ID | 3966004 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 127887 |
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| End bp | 130691 |
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| Gene Length | 2805 bp |
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| Protein Length | 934 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637919163 |
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| Product | membrane protein-like |
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| Protein accession | YP_525580 |
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| Protein GI | 90019753 |
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| COG category | [S] Function unknown |
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| COG ID | [COG5373] Predicted membrane protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGGCT TGGTGGTACT GGCAGTACTT ATACCCTTAG CGCTGTTAGT AGGTTGCGTA
CTGGGTTTTG TGGCTTTTGT GCAGCTTGGT AAGGTGCGAG CCGAAGTGGC GCAACTAAAG
CAGCAGCTAG AAAAAGCGAT TAGCGAAAGT GCATTTGCCA AACCGTCACC CACCCCGCCA
CAAGCCGCAT CCACACCTAC TGAAGCTAGC ACTGCCAGTA GCGAGCCGCG CTTTGGGCCC
AAGCCAGCCG TTTCCGAGCC GCGCGTGGCT ACGGCGCCGC GTGTTGCCGA GCCAGAAATC
AAGCAGGCAC TTATTCAGCA ACAAATAGCT ACGCAGCCAA TAGCCGACAC ATCGCAGCGA
GTAGATATTG GTAAACCCAT TGAATTACAT CCCCGCACAG CGTCTAACAC TTCTTCAAGC
CCTGCGCGCG CACCTAGTAC TCCTTCGCCT TTTATTACCC ATTTAACCCA GCATTGGATG
GTATGGTTGG GTGGTTTTTG CGTTGCCTTG GCGGGTATTT TTCTTGCCAA ATACTCTATA
GAGCAAGGCC TGTTGGGGCC TGTTGCCCGC GTGGCAATGG GGGTGGTTAC TGGCCTGGCT
TTACACGCTG GTGCTGTATG GTTGCGCGCT AAGTACGGTG CTCACCCCGC GCTGGCAGCG
TTGGCGGGCG GTGGCAGTAT TACGCTGTTT GCCGCGTTGC TGGCGGCGCT GCATTTTTAC
AATATGTTTA GCCCGCTAAC GGTATTTGCT CTGTTGGCTG TGGTTGCCCT TATTACCATG
TGGCTGGCAC TACAGCATGG CCCCGTATTG GCGGTAATAG GTATGTTGGG GGCTTATACG
GTGCCGGTAA TGGTATCTAC TGGCAGTGGC AATATTGTTG CGGCTATGGC GTATGCGCTT
ATTATTTCTG CATCGGTACT TTTATTGTTG CGCCATATTA AAGCCCCTTG GTTGTGGTGG
GGGCTTATGG CGGGCGGCAT GTTTTGGTGG GCTATATCGC TTACTAGCTC GCAACCAGAT
GGTTGGCGCG GGCTGTATCT CGCCATTCTT GCTTACGGTT TAATTGCGTT TGTAGATAGC
AACTGGCGCT TGGCAAAAAG CGTGGCTGCC GGTGTGTGGC CATTTAGCCA ATCATTCAAA
CAAGAGGCAA GCAACGCACT TACGCAAACA GGCTTAAATA GTTGGTTAGC ACCTAGCTTA
CTTATTGTTG TGGCCGCGCA AATTATTAGT GCCCTTGTGC AGGGCTGGCA GGGGCAATGG
TTAAACTGGG GGCTGTTAGC GGCGTTATTA TTGTGGCTTG CAGGTAAGCA GCCAAAGTAC
ACCGGGTTGG TGTGGCTGTT ATTTGTAGGC CACTGGCTGG CAATTTTATT GCCCCAATTG
TACGAAAGTG ATGGCCAATA TTATTTCGAG TTACTTGCGC CGCAAGTTGT ACCTGCACTT
TTTAAACACC TGTTAATTTT TACGGTTTTA TTTGTTGGCT TGGCGTTTCG TAACTTAGCC
CTTGGTTTTG CTAAAAACTG GTGGGCGGCC ATGGTGGCTA TGGTGCCTGT GCTTGGTTTG
CTATTGGCAA ATTTATTGGG TGCGGCGTTC AGCTCCGATT GGCATTGGGC GCTGTTGGCC
TTTGCGTTGG GGGCTAGCTA CGTTGGCTTG GCGGTAACCG GCATTCAAAA AAATTGGACT
CAAGAATTAT ATGTATGGCT ATTTTTAGCT GGCCATTTTG CCTATTCGTT TGCCGCTACG
CTTATGTTGC AGCAAGCAAC CCTCACGCTG GCAATTGCCG CGCAAATTGT GTCTATTGCA
TGGCTTATTC GCCGGTTTGA AGTAACACAT ATTGGCTGGT TATTAAAAAC GGTAGTGGTA
TTGGTAGTGG TGCGCTTAAC GCTCAACCCG TGGTTGGCAA GTTACCCAGC CGATGCCCAT
TGGCCATTGT GGACATTTGG TGGGGCAACA CTATTTTGTG TAGTGGCTGC GCGCTGGCTA
AATGGTTACC AAGCGTTGGC GCGTTGGGCC GAAGCCGCCG CTTTGCATTT ATTAGTGCTT
ACGCTGTGGG CAGAGGCGCG CTATTGGCTT TACGATGGCG CAACCTTTCA TGCTGCGTTT
ACCTTCAACG AAGCCATTCT TAACTGTTTA TTGTTTGCAA GCTTGGCGCT GGTGTATCAC
TACAAAGCCA GCGTAAGTGC ACATATGGCA AGTTGGTATC GCGCTTATTC GGTTGTGCAA
ATGGGGGTGG CATTCATTAA TTACGGTTTG TTGGTGGTTG CGCCGTTTAT GTATGCATCG
TGGCTAAGCA CTTCGGTGGG CGAAACACCC ATATTCAATA TTCTACTTAT TGCTTACGGC
TTGCCTATTG GTTTGGCGTA CCTGTGTTAC CGTTTTTATC TACCGCGCTG GCGCCAACCG
GCTTTGGTGT TTGGCGCTGT AGCCAGTTTT ATTTTTATCT CGTTAGAAAT TCGTCACCTG
TGGCAGGGCC ATATAGATAT GAATACCGCA ACGGGGGTAG GTGAGTTGTA TACCTATTCT
ATTGTGTGGT TGTTACTTGC CGTAGGCGCG TTATTGGCGG GTAGTTGGAA GTTGGGCAAG
CGCTGTTACC AGGGCGGCTT AATGTTATTG GCATTGGTAA TTGTAAAAAT ATTTATTGTA
GATATGGCAG GGCTTGATGG CTTATTGCGC GTTGCTTCAT TTATGGGGTT GGGCTTGGCT
TTACTCGCGG TGGCGTTTTT ACATCAGAAG TTAAGTTCTA ATTTAGAACC TAATAACGAG
CAGAAATCGT CAGATGAATT TTTTACTTCA CAAGCAGACG ATTAA
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| Protein sequence | MEGLVVLAVL IPLALLVGCV LGFVAFVQLG KVRAEVAQLK QQLEKAISES AFAKPSPTPP
QAASTPTEAS TASSEPRFGP KPAVSEPRVA TAPRVAEPEI KQALIQQQIA TQPIADTSQR
VDIGKPIELH PRTASNTSSS PARAPSTPSP FITHLTQHWM VWLGGFCVAL AGIFLAKYSI
EQGLLGPVAR VAMGVVTGLA LHAGAVWLRA KYGAHPALAA LAGGGSITLF AALLAALHFY
NMFSPLTVFA LLAVVALITM WLALQHGPVL AVIGMLGAYT VPVMVSTGSG NIVAAMAYAL
IISASVLLLL RHIKAPWLWW GLMAGGMFWW AISLTSSQPD GWRGLYLAIL AYGLIAFVDS
NWRLAKSVAA GVWPFSQSFK QEASNALTQT GLNSWLAPSL LIVVAAQIIS ALVQGWQGQW
LNWGLLAALL LWLAGKQPKY TGLVWLLFVG HWLAILLPQL YESDGQYYFE LLAPQVVPAL
FKHLLIFTVL FVGLAFRNLA LGFAKNWWAA MVAMVPVLGL LLANLLGAAF SSDWHWALLA
FALGASYVGL AVTGIQKNWT QELYVWLFLA GHFAYSFAAT LMLQQATLTL AIAAQIVSIA
WLIRRFEVTH IGWLLKTVVV LVVVRLTLNP WLASYPADAH WPLWTFGGAT LFCVVAARWL
NGYQALARWA EAAALHLLVL TLWAEARYWL YDGATFHAAF TFNEAILNCL LFASLALVYH
YKASVSAHMA SWYRAYSVVQ MGVAFINYGL LVVAPFMYAS WLSTSVGETP IFNILLIAYG
LPIGLAYLCY RFYLPRWRQP ALVFGAVASF IFISLEIRHL WQGHIDMNTA TGVGELYTYS
IVWLLLAVGA LLAGSWKLGK RCYQGGLMLL ALVIVKIFIV DMAGLDGLLR VASFMGLGLA
LLAVAFLHQK LSSNLEPNNE QKSSDEFFTS QADD
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