Gene Sde_0095 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_0095 
Symbol 
ID3967334 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp115035 
End bp115595 
Gene Length561 bp 
Protein Length186 aa 
Translation table11 
GC content52% 
IMG OID637919154 
Productsigma-24 (FecI-like) 
Protein accessionYP_525571 
Protein GI90019744 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones41 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCACG ACAGTGAACA AATTTTAAAC GAGTGGCTGG TCGCTGCCGC ACAGGCGGGC 
GATTCAGCAG CGCTCCAGCG CCTTATTGCC CGCTGGCAGC CGCGCCTGCT CAGCTATAGC
GTATCGCAAT TGCAAGATAG AGAAGCCGCT CAAGATGTTG TGCAAGAGGT AATGCTGCAA
ATAACAAAAA AGCTGATGCA GCTACAGGAC CCGGCCGCTT TTCCAAAGTG GGCCTACCAA
ATTTTACAGC GTCGCGGCAT TGACTGGATA CGGCGCAAAC AAACGCGCAG AAAGTACGAG
CAGCCCATGC CCGACGACGA GTCCCATGTG GAACTAGGCG GCACCACTAC GCCCGATCAC
GCGCAGAATA TCTCGCTACA GCAGGCGTTG CACAGCTTAG AGCCAGAGGC TCAACAAATT
ATTCGCCTTT TTTATATGGA AGGCTTTAGC GTCCAAGAAA TTGGCAGCAT TATCGATAAA
CCGGAAGGCA CAGTGAAATC TCGCTTGTTT GCCGCCCGCA ATAAGTTAAA ACAGGTTTTG
GAAGGAGGTC ATCATGACTA A
 
Protein sequence
MKHDSEQILN EWLVAAAQAG DSAALQRLIA RWQPRLLSYS VSQLQDREAA QDVVQEVMLQ 
ITKKLMQLQD PAAFPKWAYQ ILQRRGIDWI RRKQTRRKYE QPMPDDESHV ELGGTTTPDH
AQNISLQQAL HSLEPEAQQI IRLFYMEGFS VQEIGSIIDK PEGTVKSRLF AARNKLKQVL
EGGHHD