| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0084 |
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| Symbol | |
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| ID | 3967323 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 104416 |
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| End bp | 106911 |
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| Gene Length | 2496 bp |
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| Protein Length | 831 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637919143 |
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| Product | nitrate reductase catalytic subunit |
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| Protein accession | YP_525560 |
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| Protein GI | 90019733 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR01706] periplasmic nitrate reductase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGTTA CACGAAGAGA CTTTGTACGC CATCAGGCAC TGGCTACCGC TGCGGCCGCC
GCAGGCGTTG CCGTACCCGC TGCAGCAACC AATATTGTTA CCACCGCCGC AGACAACAAA
TTAGTTTGGT CGAAAGCGCC ATGTCGCTTT TGCGGCACCG GCTGCAGTGT GAATGTTGCC
ACTAAAGAGG GGCGCGTTGT GGCCACCCAT GGCGATATTA AATCGCCCGT TAACCGGGGC
CTTAATTGTG TAAAAGGCTA CTTTTTATCA AAAGTAATGT ACGGCGAAGA TCGCCTTACT
CAGCCGTTAC TGCGCAAAAA AAATGGTGTT TATGCCAAAG ATGGCGAATT CGAACCAGTA
ACGTGGGAAG AAGCTTTCAC CATCATGGCA GAAAAATTTA AAAAAACGCT CAAAGAAAAA
GGCCCCGAAG GCATTGGAAT GTTTGGTTCT GGCCAGTGGA CTGTGTGGGA AGGCTACGCC
GCATCTAAAT TAATGAAGGC GGGTTTTAGA AGCAATAATA TCGACCCGAA CGCGCGCCAC
TGTATGGCAT CTGCAGTGGG TGGCTTTATG CGTACCTTTG GTATTGATGA GCCCATGGGC
TGCTACGACG ACTTCGAACA CGCCGACGCC TTTGTCTTGT GGGGCTCGAA CATGGCGGAG
ATGCACCCTA TATTGTGGAC GCGTATTGCC GATCGTCGTT TAAGTTACCC GCACGTACAA
GTTGCGGTTA TGTCTACCTA CGAGCATCGC AGTTTTGATT TGGCCGACTT GGGCGTGGTG
TTTACGCCAC AATCCGATTT GGCAATTGCC AATTTTATTG CCAACTACAT AATTCAAAAT
AAAAAAGTAA ATTGGGATTT TGTTAAAAAA CACACCAACT TCCGCGTAGG CACAACAGAT
ATAGGCTACG GCCTGCGCCC AGAACACCCA TTGCAAAAAG CGGCCAAGAA TGCCGATAGT
GCAGGGGCTT CTGAACCTAT TGATTTTGAA ACCTACGCAA AATTTGTTGC AGATTACACC
GTCGAAAAAG CCAGCGAAAT AAGTGGTGTA AGTGAAGACA AATTAATTAA GCTAGCCAAG
CTCTACGCCG ACCCCAATAT CAAAGTTATG TCTCTGTGGA CTATGGGGGT GAATCAACAT
ACGCGCGGCG TGTGGATGAA TAATCTTATT TACAATATTC ATTTATTAAC CGGCAAAATA
TCTGAACCAG GTAATAGCCC ATTTTCATTA ACCGGCCAGC CTTCTGCTTG TGGTACCGCA
CGCGAAGTGG GTACTTTTTC GCATCGGCTA CCTGCAGATA TGGTTGTTAC AAACCCAAAG
CATCGTGCCT ACGCAGAAAA AATATGGAAG CTACCAGAAG GTAGCATTCC TGAAAAAGTT
GGTGCGCATG CCGTATTGCA AAGCAGAAAA CTAAAAGACG GTGAAATCAA CGCTTACTGG
GTGCAAGTAA ACAATAATGT GCAAGCTGGG CCAAATATTA ACGAAGAGGT GTTGCCGGGC
TATCGCAACC CACAAAACTT TATTGTGGTT TCCGATGCAT ACCCAACTGT AACCGCCCAA
GCTGCCGACT TGATTTTACC CAGCGCTATG TGGGTAGAAA AAGAAGGTGC TTACGGCAAT
GCAGAACGCC GCACTCAATT TTGGCATCAA CTTGTTAATG CACCTGGCGA TGCAAGATCT
GACCTGTGGC AGCTTGTGGA ATTTTCCAAA TATTTCAAAG TAGAAGAAGT ATGGCCAGCA
GACCTAATTG CCAAAATGCC CGAAGCAAAA GGTAAAACCC TGTTCGATAT TTTATATAAA
AACGGCAAGG TAAATAAATT TCCGCTCGCG CAAGTAAGTA AAGATTACGA AAACAAAGAA
GCCGATGCGT TTGGTTTTTA TATTCAAAAA GGGCTGTTTG AAGAATACGC CGAGTTTGGT
CGCGGTCATG GCCACGATTT AGCCGACTTT GATCGCTACC ATGAAGAGCG CGGTTTGCGC
TGGCCAGTTG TTAACGGCGA AGAAACGTTG TGGCGTTATC GCGAAGGCAG CGACCCCTAT
GTAGAAAAAG GCAAAGGTGT ACAGTTTTAT GGCAAACCAG ATGGCAAAGC AATTATTTTC
GCGCTGCCCT ACGAGCCACC AGCGGAATCG CCCAACAAAG AATATCCGTT CTGGCTGTGC
ACCGGTCGCG TTATTGAGCA TTGGCATTCC GGCTCTATGA CACAGCGTGT GCCCGAGCTG
TATAAAGCCT TCCCCGATGC CGTGTGTTTT ATGCATCCAG AGGATGCGCG CAGTGCGGGT
TTGCGACGCG GCGATAAAGT AAAACTGCAA TCTATACGCG GGCACATTAT TACGCGCATA
GAAACACGTG GCCGCAACAA GCCACCTAAA GGGTTAGTGT TTGTACCTTG GTTTGACGCA
CGCCAACTAA TTAACAAAGT CACCTTAGAT GCGACCGACC CCATTTCTAA GCAAACCGAC
TTTAAAAAAT GTGCAGTAAA AGTGGAGCGA GTATAA
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| Protein sequence | MTVTRRDFVR HQALATAAAA AGVAVPAAAT NIVTTAADNK LVWSKAPCRF CGTGCSVNVA
TKEGRVVATH GDIKSPVNRG LNCVKGYFLS KVMYGEDRLT QPLLRKKNGV YAKDGEFEPV
TWEEAFTIMA EKFKKTLKEK GPEGIGMFGS GQWTVWEGYA ASKLMKAGFR SNNIDPNARH
CMASAVGGFM RTFGIDEPMG CYDDFEHADA FVLWGSNMAE MHPILWTRIA DRRLSYPHVQ
VAVMSTYEHR SFDLADLGVV FTPQSDLAIA NFIANYIIQN KKVNWDFVKK HTNFRVGTTD
IGYGLRPEHP LQKAAKNADS AGASEPIDFE TYAKFVADYT VEKASEISGV SEDKLIKLAK
LYADPNIKVM SLWTMGVNQH TRGVWMNNLI YNIHLLTGKI SEPGNSPFSL TGQPSACGTA
REVGTFSHRL PADMVVTNPK HRAYAEKIWK LPEGSIPEKV GAHAVLQSRK LKDGEINAYW
VQVNNNVQAG PNINEEVLPG YRNPQNFIVV SDAYPTVTAQ AADLILPSAM WVEKEGAYGN
AERRTQFWHQ LVNAPGDARS DLWQLVEFSK YFKVEEVWPA DLIAKMPEAK GKTLFDILYK
NGKVNKFPLA QVSKDYENKE ADAFGFYIQK GLFEEYAEFG RGHGHDLADF DRYHEERGLR
WPVVNGEETL WRYREGSDPY VEKGKGVQFY GKPDGKAIIF ALPYEPPAES PNKEYPFWLC
TGRVIEHWHS GSMTQRVPEL YKAFPDAVCF MHPEDARSAG LRRGDKVKLQ SIRGHIITRI
ETRGRNKPPK GLVFVPWFDA RQLINKVTLD ATDPISKQTD FKKCAVKVER V
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