| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0045 |
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| Symbol | |
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| ID | 3965353 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 50319 |
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| End bp | 50978 |
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| Gene Length | 660 bp |
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| Protein Length | 219 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637919104 |
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| Product | GGDEF |
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| Protein accession | YP_525521 |
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| Protein GI | 90019694 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1999] Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.986314 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGACTGAAC AAACCAACAA GCAGCAAAAA GGCATTAAAT ACACTGTTAT AGCCGCCGTG
GCGTTTATGG TAATAGTGTT AAGTTTGTTT ATGAACAAAA TTTTGCAGCC GCGCATACTA
AGCGATCAAC AATTGCGGGC CAATGGCGCC ATAGAATTTG ATACCGCTAG AATTATTCGC
GACTTTAATT TGGTTGATCA AAACAACCAA CCCTATACCT TAGAAGCCCT AAAGGGTAAA
TGGACATTAA TCTACTTTGG CTTTACCCAC TGCCCAGACA TTTGCCCAAC TACGCTTATG
CAACTTAGCA AAGTGGTAAA TTCATTAGAG CCAGAAATAA AAGCCAATAC CCAGGTACTA
ATGGTAACGG CCGACCCAGC GCGCGATACA CCAGAAAAAT TAAAAATATA TATAGAGCAC
TTTAATAAAG ACTTTAATGC AATTACCGGC GAATTTTTAG CAGTAAAACG TTTGGCTGGC
GATTTAAACG TAGCTTTTAA TAAAGTAATG CTAGATAACG GCGACTACAC CATAGATCAC
TCAGGCAACT TAATTCTTAT CAACCCGCAC GGGCACTACC ACGGTTTCTT TAAGCCTCCT
TTTGAGCTGG CTAAATTAAA ACTTACTTAC CAGTCTATTG TCTCTAGTGC AGAGCTTTAA
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| Protein sequence | MTEQTNKQQK GIKYTVIAAV AFMVIVLSLF MNKILQPRIL SDQQLRANGA IEFDTARIIR
DFNLVDQNNQ PYTLEALKGK WTLIYFGFTH CPDICPTTLM QLSKVVNSLE PEIKANTQVL
MVTADPARDT PEKLKIYIEH FNKDFNAITG EFLAVKRLAG DLNVAFNKVM LDNGDYTIDH
SGNLILINPH GHYHGFFKPP FELAKLKLTY QSIVSSAEL
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