| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0026 |
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| Symbol | |
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| ID | 3968159 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 29694 |
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| End bp | 30530 |
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| Gene Length | 837 bp |
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| Protein Length | 278 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637919085 |
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| Product | shikimate dehydrogenase |
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| Protein accession | YP_525502 |
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| Protein GI | 90019675 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATACCT ATATGGTTGT GGGCAACCCT ATTGCCCAAT CAAAATCGCC CCTTATTCAC
ACCATGTTTG CCGCCCAAAC CGAGCAGCAG CTGGAATACA GCCGCCAATT ATTAGAGCCG
GGTGAGTTTG ATGCAGCGGC CAAGACTTTT TTTGCAGGCC AGGGCAAAGG CATAAATATC
ACCATGCCGT TCAAACAAGA TGCCTACAAT TTTGCCGATG AGTTAAGCCC AAGAGCGCTT
TCTGCCGGTG CAGTAAATAC CCTAATAAAA CGCGAAGATG GCAGCATTTT AGGCGAAAAT
ACCGACGGTG TAGGCTTAAT TAACGACATT ACAGATAACC TAAACTGGAC CTTAAGCGGC
CGCAAAGTGC TAATTGTAGG TGCCGGTGGT GCCGTAGGTG GCATACTGCT ACCGTTAATG
GAACAAAACC CAGCCGAGGT GCTCATAGTT AATCGCACGG CTAGCAAAGC CGAAGAGCTG
GCGGCGCGCT TTGCGAGTAT GGGTAATATA CGCGGTGCCG GTTACGGGGA ACTTAGCGCA
GCAGAGGGCG GAAGCTGCTC GGCGTTTGAT GTGATTATTA ACGGTACGTC CACCAGTTTG
ACCGGTGATT TACCCCCTAT ACCGCCAGCA GTAATTACAA ACACTAGCTG CGTGTACGAC
ATGGTTTATG GCGCAGAACC AACGCCCTTT ATGGTATGGG CACAAAACCA TGGCGCCGCA
GCAACCGCAG ATGGCCTAGG CATGCTAGTT GGCCAGGCAG CAGAGAGTTT CTATCTATGG
CGAGGCATAA GGCCCGATAT AGCGCCAGTG ATGGCGGCAT TGCGTCAAAG TCAGTAA
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| Protein sequence | MDTYMVVGNP IAQSKSPLIH TMFAAQTEQQ LEYSRQLLEP GEFDAAAKTF FAGQGKGINI
TMPFKQDAYN FADELSPRAL SAGAVNTLIK REDGSILGEN TDGVGLINDI TDNLNWTLSG
RKVLIVGAGG AVGGILLPLM EQNPAEVLIV NRTASKAEEL AARFASMGNI RGAGYGELSA
AEGGSCSAFD VIINGTSTSL TGDLPPIPPA VITNTSCVYD MVYGAEPTPF MVWAQNHGAA
ATADGLGMLV GQAAESFYLW RGIRPDIAPV MAALRQSQ
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