Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0023 |
Symbol | |
ID | 3968156 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 26674 |
End bp | 27873 |
Gene Length | 1200 bp |
Protein Length | 399 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 637919082 |
Product | filamentous haemagglutinin-like protein |
Protein accession | YP_525499 |
Protein GI | 90019672 |
COG category | [L] Replication, recombination and repair [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0758] Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake |
TIGRFAM ID | [TIGR00732] DNA protecting protein DprA |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGTAACCT TAATAAAAGG TATTCTCAAC GGCTGTAAAC CAATCACGGA TGAAAATATG CTTAGTTCAA TTGAAGAGCT CATACTGTTT ACTCGCCTAC CAGGTGTAGG TGCGGCCACA TACTGGCAGT TGTTAGATCG CTTTCCTAGC ATACACTCTG CGCTGCAAGC CTCACCCGAA GCACTTAAAC CATTTCTCTC GCAAGAAGCC CTCGATACCC TAGCGTTGGT ACGCAGCCAA AAATCTGCCT CTATGGCTGT GCAGCAGGTG CAGCGGGATA TGGATTGGCT GCAAAAAAAC GACATTACCC TAGTAGATAC TGACCACACC GCCTACCCAG AGTTACTGCG CGAAATAAAA CGTACGCCGC CATTGCTGTA CGTCAAAGGT TGCCCGGCGA GTTTAAACTT TCCTCAGGTG GCCATTGTGG GCAGCCGCAA GCCCACGCCT GCTGGCCGCG ACACTGCTCA GGCCTTTGGC TCCGATTTGG CAAAATCGGG TTTTACCATT ACCAGTGGCT TGGCTATGGG TATTGATGCC GCCGCGCACG AGGGCGCCGT TAAAGTTAAA GGCCGTACCA TTGCAGTAAT TGGTACCGGC ATAGATAGCG TTTACCCCCA GCGCAATAGC GCATTAGCTA GCGAAATTAT TGCTAACGGT GGTGCAATAG TAAGTGAGTT CCCCTTGGGT ACCGACCCAC AACCGCAAAA CTTTCCACAG CGAAACCGTA TAGTTAGCGG TTTAAGTTTT GGTGTGGTGG TGGTCGAAGC GGCGGTAAAA AGTGGCTCTC TTATCTCTGC GCGCTATGCA TTGCAGCAAA ACAGAGAGTT GTTTGCGGTG CCTGGCTCCA TCCACAACCC TTTAAGTCGT GGTTGCCACG CATTAATAAA AGAAGGCGCC AAGTTGGTAG AAACCTCGCA AGATATTGTC GATGAGCTAG GCGGCTTCTT ATCGCGCCAG CGCGATTTAT TAGATATTTA CAAGCAGCCC GCAGAAAATA GTTTGCCAAA ACACGACGAG CTTATAGCTA ACGATTTAGA AGACGATGTA CTGGCAAAAC TAGATTACAG CCCAACCCCC ATCGACGCTT TAGCCGAGCG CACCAAAAAG CCCATTGGCG AAGTTATGTC TTGTTTGCTC ACCATGGAGC TAAAAGGCTT AGTGGCCAAC TTGGGTGCAG GCTATATGCG GTTGCGCTAG
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Protein sequence | MVTLIKGILN GCKPITDENM LSSIEELILF TRLPGVGAAT YWQLLDRFPS IHSALQASPE ALKPFLSQEA LDTLALVRSQ KSASMAVQQV QRDMDWLQKN DITLVDTDHT AYPELLREIK RTPPLLYVKG CPASLNFPQV AIVGSRKPTP AGRDTAQAFG SDLAKSGFTI TSGLAMGIDA AAHEGAVKVK GRTIAVIGTG IDSVYPQRNS ALASEIIANG GAIVSEFPLG TDPQPQNFPQ RNRIVSGLSF GVVVVEAAVK SGSLISARYA LQQNRELFAV PGSIHNPLSR GCHALIKEGA KLVETSQDIV DELGGFLSRQ RDLLDIYKQP AENSLPKHDE LIANDLEDDV LAKLDYSPTP IDALAERTKK PIGEVMSCLL TMELKGLVAN LGAGYMRLR
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