Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0009 |
Symbol | |
ID | 3968828 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 10761 |
End bp | 12200 |
Gene Length | 1440 bp |
Protein Length | 479 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 637919068 |
Product | PAS |
Protein accession | YP_525485 |
Protein GI | 90019658 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.304848 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.553923 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAAGT ATTTGTTTAT AGCAAGCCAG TTATTTTTAT TTACCTACGC TTGCCAAGCG CATGCGGGGT TTATGCATTA TTTTAAAAAC CCCGATGGCT CTACTAAGTG GCAACACATT GCCAACTTTT CGAGCAGCGT TTTAATTTTA TTATTGTTAA TTACCGCTAT ATTTTTGTTC TTTAGCGTAC GCCGCGCCCA CAAAGCTAAC AAAGAACTTA AATTAATACG CGACGATTTA GAGCAGCGTG TAATAGAGCG TACAGCAACC TTAGACGAAT CTAACCGCCT ATTGCAACGC GCCAACCAAA TGCTAGAAGG CGAAATAAGC CAGCACAAAG AAACCACTGC GCTTTTACAA TCGTCTGAGG CTTACACCAA AAGCATTTTA GACTCTATGC CGCTAATGCT TATTGGACTG AATAAAGACC TGGGTGTAAC CCAGTGGAAC AACTGGGCAG AAAAGTCCAC CGGTATACCA GCAGATAAAG TTGTAGGCAA ATACCTTTGG GACGCTTACC CCACCATTAC CCTTACACCC GATCAAATTA ACGAGGTGTT AGAAAAAGGT GAAACCGTCA CCATCAAACA CAGCCAACGC GGCCAGTATT ATTTCGATAT TACTATTTAT GCCCTTAAAG GCCATCGCGA AACAGGCCTT GTGGTACTGG TCGACGATGT AACCCAACAG AGCAAAGCCG AGAATTTGCT AATTCAACGC GATAAGTTTT CTGCAATGGG TGAACTTGCA GCCGCCATGG CGCACGACAT TAATATACCG TTGCGTGCCA TTGTGCGCGA TATTCACGAG TTGCGTGAAA ATATTAGTGG CGAAGAAATT AGCCCGCGCA CACTTACGCG CTGGTTAGAC GACGCTAAAG AAAACAGCCG TCAAGCGTCG GCCATTATTA GCCACCTGCT TGAATTCTCG AACAGCGAAA GCCAAGAGAA GCAGCTTACT TCTATACCTA ATATTATTGA TCACTCGGTA TTAATTGCAG GCTCTATGTT CTCCGATACC GATGGCCTGA AGTTTAAAGA TATTCAAATA GAACGCAATT ACGCTAGTGA CCTACCCCAA GTACCTTGCC ATATTTCAGA ACTGCAACAG GTATTTTTAA GTTTGCTGCG CCACGCCTGT TACTCGTTGG TTAAATCACC CAAGAAGAGC GAAAAGCCGA GCATCAATAT TTCGGTAAGT GAATTCTACG ATTCCATGTG GATAAAAATT CAACACAATG GCCGTGGCTT AACAAGCGAC GAGCAAATGA CCATATTCGA GCCCTTCTAC CAGAACGAAG CTATCTCGAA TGGTTGTGAC TTAGAAAATC GTTTGTCGTT TTCTTATTTT ATTATTACCG AGCACCATCA CGGGCAAATG GCTGTTACGT CCGATGAGAA TGTAGGCAGC ACGTTCCATA TTCAATTATT GCTGCGTTAA
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Protein sequence | MKKYLFIASQ LFLFTYACQA HAGFMHYFKN PDGSTKWQHI ANFSSSVLIL LLLITAIFLF FSVRRAHKAN KELKLIRDDL EQRVIERTAT LDESNRLLQR ANQMLEGEIS QHKETTALLQ SSEAYTKSIL DSMPLMLIGL NKDLGVTQWN NWAEKSTGIP ADKVVGKYLW DAYPTITLTP DQINEVLEKG ETVTIKHSQR GQYYFDITIY ALKGHRETGL VVLVDDVTQQ SKAENLLIQR DKFSAMGELA AAMAHDINIP LRAIVRDIHE LRENISGEEI SPRTLTRWLD DAKENSRQAS AIISHLLEFS NSESQEKQLT SIPNIIDHSV LIAGSMFSDT DGLKFKDIQI ERNYASDLPQ VPCHISELQQ VFLSLLRHAC YSLVKSPKKS EKPSINISVS EFYDSMWIKI QHNGRGLTSD EQMTIFEPFY QNEAISNGCD LENRLSFSYF IITEHHHGQM AVTSDENVGS TFHIQLLLR
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