| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0004 |
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| Symbol | gyrB |
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| ID | 3968823 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 4437 |
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| End bp | 6863 |
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| Gene Length | 2427 bp |
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| Protein Length | 808 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637919063 |
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| Product | DNA gyrase subunit B |
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| Protein accession | YP_525480 |
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| Protein GI | 90019653 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
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| TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00999238 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.275353 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGAAG AACAACGCAA TTACGACTCC TCCAGTATTA AGGTACTTAA AGGTTTAGAT
GCAGTACGCA AGCGCCCAGG TATGTATATT GGCGATACCG ACGACGGTAC TGGCTTGCAC
CACATGGTGT TTGAGATTGT AGATAACTCC ATCGACGAAG CTTTGGCTGG CCACTGTAAC
GAGATTAAAG TTGTAATTCA CCCTAATGAA TCGGTAACCG TGTCGGACAA CGGCCGTGGT
ATTCCTACCG AAATGCACGA AGAGGGTGTG TCTGCAGCAG AAGTAATTAT GACTGTACTG
CACGCAGGCG GTAAGTTTGA TGACAATACC TACAAGGTTT CCGGCGGCTT GCACGGTGTG
GGTGTATCGG TTGTTAACGC ACTATCTGAA GTATTAACGC TTACTATTCG TCGTGGTGGC
CAAGTATTTG AGCAGGTATA TCACCACGGT GTTCCTCAAG CACCGCTTAC AGTTATAGGA
GAGACGGAAG TATCTGGTAC CCAAGTTCAT TTCAAACCCT CTGCAGAAAC CTTTACCAAT
ATCGAATTCC ACTTCGATCA ACTAGGTAAG CGCCTACGTG AGCTATCGTT CTTGAACTCT
GGCGTGCGCA TTGTGTTAAT TGATGAGCGC AGCGGTAAAG AAGATGTATT TGAATACGAA
GGTGGATTGA AGGCCTTTGT TGGTTACTTA AACCAGAATA AAAACCCAAT AAACAAAGTT
ATTCATTTCT CTACCTTCCG CGAAGAAGAC GGTGTAGGTG TAGAAGTAGC ACTACAGTGG
AACGACAGCT TCCAAGAAAA CATATTCTGT TACACCAACA ACATTCCACA GCGCGATGGT
GGTACTCACT TAGCGGGTTT CCGTGCTGCA TTAACGCGTA ACCTAAACAG CTACATAGAA
TCTGAAGGCC TGCTAAAGAA AGAGAAGGTA AATACCACTG GTGACGACGC CCGTGAAGGC
TTAACGGCGA TTATCTCTGT AAAAGTACCA GACCCTAAAT TCTCTTCGCA AACCAAAGAC
AAACTCGTAT CGTCTGAAGT TAAAACAGCA GTAGAGCAAG AGCTAAGTAA ATCGTTTAGC
GAATACCTGC TAGAAAACCC GCAAGAAGCG AAGCAAATTG TGGGCAAAAT GATGGAAGCT
GCACGCGCAC GTGAAGCTGC CCGTAAAGCG CGCGAAATGA CCCGTCGTAA AGGCGCACTG
GATATAGCAG GCCTGCCAGG TAAACTGGCC GATTGCCAAG AGAAAGACCC AGCACTTTCT
GAAATTTACC TAGTGGAGGG TGACTCGGCA GGCGGTTCCG CCAAACAAGG CCGAGACCGT
CGCACACAAG CTATTTTGCC GCTTAAAGGT AAGATTCTTA ACGTAGAAAA AGCCCGTTTT
GACAAAATGC TATCCTCGCA AGAGGTGGGT ACCCTTATTA CAGCACTCGG TTGTGGTATT
GGTGCGCAAG AATTTAACCC AGAAAAACTG CGTTACCACA GCATTATTAT CATGACGGAT
GCTGACGTGG ATGGTTCGCA CATCCGCACA CTGTTACTTA CCTTCTTCTT CCGTCAAATG
CGTGAGCTTA TTGAACGCGG CCATGTTTAT ATTGCGCAAC CACCGCTGTA TAAAATTGCC
AAAGGCAAGC AAGAGCAATA CTTAAAAGAC GATGATGCGT TAACCCAATT CTTAACTAAC
GCAGCTATGG AAACCTCTGC ATTACATGTA TCTGCAGAAG CGCCACCGCT ATCTGGTGCC
CAGTTAGAAG CACTGGTTAT TGAATACCGT AAAGTGATGA GCACCATCGA AAAGCTATCG
CGCTTGTACC CAGATCACGT GTTAGAAGAA ATGATCTACT TACCCGCGCT AAACAAAGAG
TCACTTACCG ACAAAGCAGC GGTAGATGCG TGGTGCGAGC TACTCACTGC CAAACTAGAA
GTGCTAAACG CAGCCTCTAA AACACACCGC TACGTTGTTA ACACCATCGA AAACAAAGAG
CGCCACACCT TTATTCCAGA GCTAACTATT GTTGCGCACG GCGTTGGCCA TAAAACCCGT
TTAAATGAAG ATTTATTCGG CTCTGAAGAT TACAAAAGCA TGCATAAACT GGGCGAAACC
CTTAGCGGCT TAATCGAAGA GGGTGCTTAC GTTGCCAAAG GCGAGCGCAA GCAACCAGTT
AGCACATTTA AAGAAGCATT AGATTGGATT ATGGCCGAAT CCAAAAAAGG CTACGGTATT
CAGCGCTACA AAGGGTTGGG TGAGATGAAC CCCGAGCAGC TATGGGAAAC CACCATGGAC
CCAGAAACTC GCCGCATGCT ACAAGTAACA GTAGAAGACG CCATCGGCGC CGACCAAATC
TTTACCTGCC TAATGGGCGA TAACGTAGAG CCGCGTCGCG AATTTATTGA AACGAACGCG
CTTTCTGTTG CTAACTTGGA TGTGTAA
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| Protein sequence | MSEEQRNYDS SSIKVLKGLD AVRKRPGMYI GDTDDGTGLH HMVFEIVDNS IDEALAGHCN
EIKVVIHPNE SVTVSDNGRG IPTEMHEEGV SAAEVIMTVL HAGGKFDDNT YKVSGGLHGV
GVSVVNALSE VLTLTIRRGG QVFEQVYHHG VPQAPLTVIG ETEVSGTQVH FKPSAETFTN
IEFHFDQLGK RLRELSFLNS GVRIVLIDER SGKEDVFEYE GGLKAFVGYL NQNKNPINKV
IHFSTFREED GVGVEVALQW NDSFQENIFC YTNNIPQRDG GTHLAGFRAA LTRNLNSYIE
SEGLLKKEKV NTTGDDAREG LTAIISVKVP DPKFSSQTKD KLVSSEVKTA VEQELSKSFS
EYLLENPQEA KQIVGKMMEA ARAREAARKA REMTRRKGAL DIAGLPGKLA DCQEKDPALS
EIYLVEGDSA GGSAKQGRDR RTQAILPLKG KILNVEKARF DKMLSSQEVG TLITALGCGI
GAQEFNPEKL RYHSIIIMTD ADVDGSHIRT LLLTFFFRQM RELIERGHVY IAQPPLYKIA
KGKQEQYLKD DDALTQFLTN AAMETSALHV SAEAPPLSGA QLEALVIEYR KVMSTIEKLS
RLYPDHVLEE MIYLPALNKE SLTDKAAVDA WCELLTAKLE VLNAASKTHR YVVNTIENKE
RHTFIPELTI VAHGVGHKTR LNEDLFGSED YKSMHKLGET LSGLIEEGAY VAKGERKQPV
STFKEALDWI MAESKKGYGI QRYKGLGEMN PEQLWETTMD PETRRMLQVT VEDAIGADQI
FTCLMGDNVE PRREFIETNA LSVANLDV
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