| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0003 |
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| Symbol | |
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| ID | 3968822 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 3297 |
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| End bp | 4400 |
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| Gene Length | 1104 bp |
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| Protein Length | 367 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637919062 |
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| Product | RecF protein |
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| Protein accession | YP_525479 |
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| Protein GI | 90019652 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1195] Recombinational DNA repair ATPase (RecF pathway) |
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| TIGRFAM ID | [TIGR00611] recF protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.0312936 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.12892 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCCCATC TCTCGAACTT AAAAGTACAG CAGTTTCGCA ATTTGGGCTT GGTAGATATA
ACACCAAGCC CAACGCTCAA CCTTGTTTAC GGTGAAAATG GCTCGGGTAA AACCAGTCTG
TTAGAAGCTA TAAGCGTACT TGCTCACTGT CGATCCTTTC GTACCCACAA GTACAGACGT
CTGATTCAAG ACACAACTAC AGCATTTACT GTGTTTGCCA CGGTAGAAGG TAGTGACGCA
TTTAAGGTAG GTGTGCAACG CGAGTGGTCT GGCAAGAGCA CAGCTAAGTT GGATGGTTTA
AGTGCAAAGT CATCCGCTCA GCTCGCCACC AACTTACCTG TTCAGATAAT AGATGCCCAT
ACCTTTGCTT TGTTAGAGGG TGGCTCTAAA GCTAGGCGCA AGTTCTTTGA TTGGTTAGTG
TTTCACGTGA AACATGAATT CAAAACAGCT TGGGCAAACT ACGTTAAATG TGTAAAACAA
CGGAATAGTT TGCTGCGACA TGATAAAATA GCCTATTCCG ACCTACGCCC CTGGGATGAG
CAAATCGCAG GGTTGGCGGC TACCATAGAT GAATGCCGTG TTGAGTGTAT AACACCGCTT
ATTCAGGCGT TTAAAGCGCT TATGGGTGAG TGTAAGTTTG CGGATAACGT AGATTTAACG
TTGGCTTATC AGCCGGGTTG GAAAGAGGGG GAGCTAAGCT TTCCAAAACA GTTAGAGCAG
GCTTTCGCGC GTGATAGAAA ACTAGGCTAC ACCATCTTAG GCCCGCATAA ATCTGATTTA
AAAATTACAG CTAATGGCTC GCCTGCAGTA GAGGTTTTAT CTCGCGGCCA GCAGAAGGCA
GTAATTAACG CTTTGCATAT AGCAGAAGCG CAAGTTTACA AAACACAAAT AGGGCGCACG
CCGGTGTTCC TGTTAGATGA TATGCCTTCC GAGTTGGATG CAAATCATAT AGCTATACTC
AGTGGCTGGC TAAGTAATTT AGGTGCGCAG GTATTTGTTA CAGGGGTGGA CGCGAATAAG
TTAGCGTCTG TATGGCCCCT ACAAAAGAAC GAAGCAATAA AAATGTTTCA CGTGAAACAA
GGTGAAGTAA CGGTTTCTCA ATAA
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| Protein sequence | MPHLSNLKVQ QFRNLGLVDI TPSPTLNLVY GENGSGKTSL LEAISVLAHC RSFRTHKYRR
LIQDTTTAFT VFATVEGSDA FKVGVQREWS GKSTAKLDGL SAKSSAQLAT NLPVQIIDAH
TFALLEGGSK ARRKFFDWLV FHVKHEFKTA WANYVKCVKQ RNSLLRHDKI AYSDLRPWDE
QIAGLAATID ECRVECITPL IQAFKALMGE CKFADNVDLT LAYQPGWKEG ELSFPKQLEQ
AFARDRKLGY TILGPHKSDL KITANGSPAV EVLSRGQQKA VINALHIAEA QVYKTQIGRT
PVFLLDDMPS ELDANHIAIL SGWLSNLGAQ VFVTGVDANK LASVWPLQKN EAIKMFHVKQ
GEVTVSQ
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