Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0001 |
Symbol | dnaA |
ID | 3968820 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 383 |
End bp | 1957 |
Gene Length | 1575 bp |
Protein Length | 524 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637919060 |
Product | chromosomal replication initiation protein |
Protein accession | YP_525477 |
Protein GI | 90019650 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0593] ATPase involved in DNA replication initiation |
TIGRFAM ID | [TIGR00362] chromosomal replication initiator protein DnaA |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0237228 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.131634 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAATTGC CTGAATCTGC GTGGGAGCAA TGTGTCTCTA GTTTGCAAAG TGAATTGCCG GCACAACAGT TTAATACCTG GATACGCCCC CTGCGTGTGC AGCAAGCAGA AGCCAGTAAT CAGCTCCACT TAATTGCGCC TAACCGCTTT GTATTGGATT GGGTGAACGA CAAGTTTAAA AGCCGTATAG ATGAGCTGTT GTCCTCCGCC GATCACCATC CTATTACTAG CGTAGAAATT AGTGTTGCGC CTAGACGTTC CACTAGCTTT GAAACCAACC AAGGTGTTGC TGCACGGCAA AAAAGGCAGC AAGAGGCGCC GCGACAAAAT ATAGCGTCAA GCCAACCCTC AAATAGTTAT AGTCGGCAAC CCCAGCAGCC AGCGGTTGAA ATGCCAGCCG AGTCGCAAAT GGCCCAGGTT GAATTATTGC CTGCTGCACC GCCAGCGCCA CTTAATAATG GCTACAACAC TGAATCTTTC GCGCAACCCT ATAACGATAA CCCTATGGGG CAGGGCAAAG TAGATAAAGT GGATGTAGAG GGCGGTTTAC AGCACAAGTC TAATCTTAAC CCTACCTTTA TATTCGATAA CTTTGTTGTG GGTAAATCCA ACCAGCTTGG CTTGGCCGCT GCCACGCAGG TAGCAGAAAA CCCCGGTGGT TCGTATAACC CGCTTTTTAT ATATGGCGGT GTAGGTTTAG GTAAAACTCA CTTAATGCAC GCGGTAGGTA ACGCGCTTTG TGTGCGCAAG CCCGGTGCCA AGGTGGTTTA CCTGCATTCT GAGCGTTTTG TTGCCGATAT GGTAAAAGCG CTGCAGTTAA ACGCCATTAA CGATTTTAAA CGTTATTACC GCTCGGTAGA TGCATTACTT ATTGATGATA TTCAGTTCTT CGCAGGTAAA GAACGGTCGC AGGAGGAGTT CTTCCATACG TTTAATGCGC TTTTGGAAGG CGGTCAGCAA ATTATTTTAA CCTGCGACAG ATACCCTAAA GAAATCAATG GCTTAGAGGA GCGTCTCAAA TCCCGCTTTG GCTGGGGGTT AACTGTTGCT ATCGAACCGC CAGAGTTAGA AACCCGCGTG GCAATATTAA AGCGCAAAGC AGAGCAGGTG GGCGCCCCTT TACCTAACGA CGCGGCATTC TTTATTGCCC AGCGTATACG CTCTAACGTG CGTGAGTTAG AAGGAGCACT AAAGCGTGTG ATAGCCAATG CCCACTTTAC CGGCAGAGAT ATTTCGGTAG AGCTTGTGCG CGAAGCACTT AAAGATTTGT TGGCCCTGCA AGACCGCCTA GTAAGTATCG ATAACATTCA GCGCGTAGTA GCCGAGTATT ACAAAATTAA AGTATCGGAT CTGCACTCTA AAAGGCGCAG CCGTTCAGTA GCACGGCCTA GGCAAGTGGC AATGTATTTA GCGAAAGACC TAACACACCA CAGTTTGCCC GAAATTGGCG AAGCGTTTGG TGGGCGAGAC CACACAACGG TTTTGCACGC ATGCCGTAAA ATTAAAGAAA TGATCGAGTC GGACGCAGAT ATTAGAGAAG ATGTTAAGAA TCTTTTGCGT ACACTCACCA CCTAA
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Protein sequence | MELPESAWEQ CVSSLQSELP AQQFNTWIRP LRVQQAEASN QLHLIAPNRF VLDWVNDKFK SRIDELLSSA DHHPITSVEI SVAPRRSTSF ETNQGVAARQ KRQQEAPRQN IASSQPSNSY SRQPQQPAVE MPAESQMAQV ELLPAAPPAP LNNGYNTESF AQPYNDNPMG QGKVDKVDVE GGLQHKSNLN PTFIFDNFVV GKSNQLGLAA ATQVAENPGG SYNPLFIYGG VGLGKTHLMH AVGNALCVRK PGAKVVYLHS ERFVADMVKA LQLNAINDFK RYYRSVDALL IDDIQFFAGK ERSQEEFFHT FNALLEGGQQ IILTCDRYPK EINGLEERLK SRFGWGLTVA IEPPELETRV AILKRKAEQV GAPLPNDAAF FIAQRIRSNV RELEGALKRV IANAHFTGRD ISVELVREAL KDLLALQDRL VSIDNIQRVV AEYYKIKVSD LHSKRRSRSV ARPRQVAMYL AKDLTHHSLP EIGEAFGGRD HTTVLHACRK IKEMIESDAD IREDVKNLLR TLTT
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