Gene Rfer_4228 details

Gene Information

• Locus tag: Rfer_4228
• Symbol: rplF
• ID: 3961946
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodoferax ferrireducens T118
• Kingdom: Bacteria
• Replicon accession: NC_007908
• Strand: -
• Start bp: 4698169
• End bp: 4698702
• Gene Length: 534 bp
• Protein Length: 177 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 637919042
• Product: 50S ribosomal protein L6
• Protein accession: YP_525446
• Protein GI: 89902975
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.00495937
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCCGTA TAGGAAAAAT GCCCGTCGCC GTTCCGGCTG GCGTGGATGT GTTGGTCAAG 
GATGACCAGA TCAGTGTCAA AGGCGCTGGT GGAAGTTTAT TCTTGACGCA AAACGCGTTG 
GTCAAAGTGA GCAGCGACGC TGGCGCGCTG AGTTTTCAGC CTGCCAACGA CTCTCGCGAA 
GCAAACGCCA TGAGTGGCAC CATGCGTCAG CTGGTGAACA ACATGGTGGT CGGTGTGACC 
AAAGGTTTTG AGAAGAAGTT GAATCTTGTT GGTGTGGGTT ACAAGGCCCA GGCGCAAGGT 
GCAAAGCTGA ATCTCACTGT GGGATATTCC CACCCGGTCA ATAAAGACAT GCCAGCTGGC 
ATCACTGTCG CGACCCCGAC CCCCACTGAA ATCGTGATCA AGGGTGCAGA CCGCCAGCGC 
GTAGGCCAGG TGGCTGCCGA GATTCGTGCG ATTCGTCCAC CTGAGCCCTA CAAAGGCAAG 
GGTATCCGTT ATTCGGACGA AAAAATCACG ATCAAAGAAA CCAAGAAGAA ATAA 

 

Protein sequence

MSRIGKMPVA VPAGVDVLVK DDQISVKGAG GSLFLTQNAL VKVSSDAGAL SFQPANDSRE 
ANAMSGTMRQ LVNNMVVGVT KGFEKKLNLV GVGYKAQAQG AKLNLTVGYS HPVNKDMPAG 
ITVATPTPTE IVIKGADRQR VGQVAAEIRA IRPPEPYKGK GIRYSDEKIT IKETKKK