Gene Rfer_4226 details

Gene Information

• Locus tag: Rfer_4226
• Symbol: rpsE
• ID: 3961944
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodoferax ferrireducens T118
• Kingdom: Bacteria
• Replicon accession: NC_007908
• Strand: -
• Start bp: 4697250
• End bp: 4697774
• Gene Length: 525 bp
• Protein Length: 174 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 637919040
• Product: 30S ribosomal protein S5
• Protein accession: YP_525444
• Protein GI: 89902973
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0098] Ribosomal protein S5
• TIGRFAM ID: [TIGR01021] ribosomal protein S5, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.00793595
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTAAAG TTCAAGCGAA AATGCAGGGT AAGGCCGTAG GGCCTGAAGA TGGCCTGCGC 
GAGAAAATGA TTGCGATTAA TCGCGTTACC AAAGTTGTCA AAGGGGGGCG AATTCTAGGT 
TTCGCCGCTT TGACAGTGGT GGGCGATGGT GATGGTAGCG TTGGCATGGG CAAGGGCAAA 
TCAAAAGAAG TCCCTGCGGC CGTGCAAAAG GCGATGGAAG AAGCCCGTCG AAACATGACC 
AAGATAACGC TCAAGAACGG GTCGATTCAT CACAAAGTGA TGGGTCAGCA CGGTGCCGCT 
TCTGTCATGA TGGCGCCAGC GCCAAAGGGC ACGGGCATCA TTGCTGGTGG CCCGATGCGT 
GCCGTCTTTG AGGTTATTGG TATTACCGAT ATTGTGGCTA AAAGTCATGG TTCGACCAAC 
CCCTACAACA TGGTTCGTGC AACGCTTGAT GCGCTGTCCC ATGACAGGAC TCCGTCTGAA 
GTTGCCGCTA AACGTGGCAA GACGATTGAA GAACTTTTTG TATAG 

 

Protein sequence

MAKVQAKMQG KAVGPEDGLR EKMIAINRVT KVVKGGRILG FAALTVVGDG DGSVGMGKGK 
SKEVPAAVQK AMEEARRNMT KITLKNGSIH HKVMGQHGAA SVMMAPAPKG TGIIAGGPMR 
AVFEVIGITD IVAKSHGSTN PYNMVRATLD ALSHDRTPSE VAAKRGKTIE ELFV