| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_4207 |
|---|
| Symbol | |
|---|
| ID | 3961924 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 4679014 |
|---|
| End bp | 4680255 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637919020 |
|---|
| Product | acyl-CoA dehydrogenase-like |
|---|
| Protein accession | YP_525425 |
|---|
| Protein GI | 89902954 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCAGCG CGTATGTACC ACTCACCCCG CTAGGGGCTG AGCCCGAATT CAATGATATG
GCTGCGGCAG TGCAGGCAAC CGCCAGGCGC TTTGCACAAG AGGTGATGCG TCCCATTGGC
AAGCAACTCG ACCGCATGTC GCCAGAACAG GTGATTGCGG CAGATTCGCC CCTATGGGGG
GTGTACCAGC AGTTTGCGGC TCTAGGTTTC GGGCTCGATA ACTTGTTGGC CATGGAGCCG
GCAGATCGGG CCCGCATCAT GTGCATTCTG TTCGAGGAGC TTGGTTGGGG TGACTCAGGA
CTGGCCGTGT CCATCGGTGC CGGCATGATC CCCGCGATGA TCAGCACAAT GCTGGGCAAC
ACATTCTGCC GGGGCCTGGC CAGCGATGAC AAGTTGGGCG TCTGGTTGAT CACTGAGCCG
GACCATGGCA CGGACTCGCT GGACCCTGAC CGCAAGATTT TTCACCCACA AGGCAATTAC
GGTCGCCCAA ATTGTGTCGT CACGATCACC GACGACGAAC TGGTCATCAG CGGCCAAAAA
GCGGCCTGGG TGTCTAACGG CACCATTGGT CAGGTTGGAC TGCTGTATGC CGCAGCAGAC
GCCGGCAACG GTCCAGACAC ACAGCATGGC GCGGTGGTCA TGGTGCCCAT GGACACGAAG
GGAATTTCAC GCGGCAAGCC ACTTGACAAG ATGGGCCAAC GTGCGCTGAA CCAGGGTGAA
GTGTATTTTG ACAATGTGCG TTTGTCCAAA GAGCACTTGC TGGCCGGCCC CGACCAGTAC
CAAATGGCCA CTTATCTGGT GCACACCATG GCAAACGGCC TGATGGGTGC AATTTTCACG
GGCTGCGCAC GCTCATCGTA CGACCTGGCG CTGGCTTATG CGCATGAGCG CAAGGCGGGT
GGCGTGCCCA TCATCCGTCA CCAATCGGTC GCGCAAAGGT TGTTCCACAT GTTCCGTAAG
GTGGAGGCCG CCTGCGCCTT GACGCGCCGC GTCGTGCACT ACAACTTCCA GACGCCGCAA
CTTGCCTTGC AAGCCGCCAT GGCAGCCAAG GTCAACGCGA CGCAGACTGC TTTTGAGGTC
GCCAGCGAAG CGCTGCAAAT GCACGGCGCT AACGGACTGA CACGGGATTA CCCGGTCGAG
AAAATATTGC GTGATGCGCG TGCTTCGCTG ATTGAGGACG GCTGCAACGA GATTCTTGCC
ATCAAGGGTG GCTACTGCCT CACCAACCCC GACCTGCTTT AA
|
|---|
| Protein sequence | MTSAYVPLTP LGAEPEFNDM AAAVQATARR FAQEVMRPIG KQLDRMSPEQ VIAADSPLWG
VYQQFAALGF GLDNLLAMEP ADRARIMCIL FEELGWGDSG LAVSIGAGMI PAMISTMLGN
TFCRGLASDD KLGVWLITEP DHGTDSLDPD RKIFHPQGNY GRPNCVVTIT DDELVISGQK
AAWVSNGTIG QVGLLYAAAD AGNGPDTQHG AVVMVPMDTK GISRGKPLDK MGQRALNQGE
VYFDNVRLSK EHLLAGPDQY QMATYLVHTM ANGLMGAIFT GCARSSYDLA LAYAHERKAG
GVPIIRHQSV AQRLFHMFRK VEAACALTRR VVHYNFQTPQ LALQAAMAAK VNATQTAFEV
ASEALQMHGA NGLTRDYPVE KILRDARASL IEDGCNEILA IKGGYCLTNP DLL
|
|---|
| |