Gene Rfer_4196 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_4196 
Symbol 
ID3961913 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp4665237 
End bp4666238 
Gene Length1002 bp 
Protein Length333 aa 
Translation table11 
GC content56% 
IMG OID637919010 
ProductTRAP dicarboxylate transporter- DctP subunit 
Protein accessionYP_525415 
Protein GI89902944 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0992694 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATTTCA GCTTGAAATC CTTAGGCGCC GCGTTGGCGC TCGGCATGAG CATCGCCGCT 
ACACCAGCAG TCGCGCAGAG CAACGTCACG ATCCGCTTTC CGGTCGAGTA CGCGGCCAAC
TTCTCAGCTG GTTTGGCCGA TCAGGACTTC GTCAAACGCA TCGAAGAAAT ATCGAAAGGG
CACATCAAAG TGCGCTTTGC ACCCAACGGT TCGATGTACA AAGGGAATGA ATTGGTGCAG
GCGATGCTGC GCGGCGACGC CGAGATGACG ACGCTTGTTC CGGCCTACTG GACCAGCATC
GCCCCCAAGG TGCAACTATT CGATCTCCCC TACGCCTTCC CGGACTACGA GACATTCGAT
CGCGTTGCCA GCAACAAAGC ATTTGTCTCC AAGGTCTTCG GTGAGGCCGA AGCCAAAGGA
GCCAAGGTGC TGGGCCTGTT GGTGAATTGT TACATCTTGC CAGGCACACG TAGTCGTCAG
CTTGTCGAGC CCAAGGACTT CAGTGGTCTG AAGTTGCGTG GGGTCGGTAA GGTGAACTCG
ACAACGATGA AGGTGCTGGG CGCGAATGCG GTCTCGATCA ACATCACCGA GATGCCTGCT
GCGTTGCAGC AGGGGTTGGT TGACGGCATG CAGACTTTGA TGGATGCGTA TGTGGAATAC
AAGTTTTACG ACAACATCAA GTACGTCACC GACGCGCACT ATCAACTGAT CTATTACCCA
TGGACGGTTA ACGCCAAGTG GTTCAACGGA CTGTCCGCAG CCGACCAAGC GCTAGTGCAG
CAGGCTGTAG ACGACGCGAT TTTGGCTAAC CGTCAGCGTG TGATAAAGAT CGCCGCCGAC
GCGACCAACG TGATGAAGGC TAAGGGTGTC AGCATCGTCA AACTCAGCGC GCAGCAAGAA
AAAGCCTGGC AGGATGCGAC TGCGCCGGTG TGGAAGCAGC TTGAGGCAGA TCTTGGCAAG
GAAATCATTG ATGAGTTTAA GGCCGTGCGG GCCGTACGCT GA
 
Protein sequence
MNFSLKSLGA ALALGMSIAA TPAVAQSNVT IRFPVEYAAN FSAGLADQDF VKRIEEISKG 
HIKVRFAPNG SMYKGNELVQ AMLRGDAEMT TLVPAYWTSI APKVQLFDLP YAFPDYETFD
RVASNKAFVS KVFGEAEAKG AKVLGLLVNC YILPGTRSRQ LVEPKDFSGL KLRGVGKVNS
TTMKVLGANA VSINITEMPA ALQQGLVDGM QTLMDAYVEY KFYDNIKYVT DAHYQLIYYP
WTVNAKWFNG LSAADQALVQ QAVDDAILAN RQRVIKIAAD ATNVMKAKGV SIVKLSAQQE
KAWQDATAPV WKQLEADLGK EIIDEFKAVR AVR