| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_4194 |
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| Symbol | |
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| ID | 3961911 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 4663429 |
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| End bp | 4664697 |
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| Gene Length | 1269 bp |
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| Protein Length | 422 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637919008 |
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| Product | TRAP dicarboxylate transporter- DctM subunit |
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| Protein accession | YP_525413 |
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| Protein GI | 89902942 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.413147 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCTTTCG CGGTACTCCT CTTCATACTC TTGCTGATAC TGCTCACGGG CGTGCCAATC
GCCTATGCGA TCGGCGGAAT TGCCGTATTG GGCAACCAGT GGTTCGACGC CACATCGTTT
ACGAGATTGG CGGAGACGCA ATTCTCGAGC GTCAATAGCT TCGTGATCAT GGCGATTCCG
TTTTTCATCC TCGCTGGCAA CGTCATGCTC AAGGGGCAGA TGGCCCGCAG CCTGTTCGAG
TTCATGGTGT CGCTGACACG GGGTATCACT GGCGGCGCCG CTATCGGCGC GACCGGTGCC
TGCGCCATAT TCGGCGCGCT GACGGGTTCG TCGGCTGCCG CCGCATCGGC GCTGGCGCCG
GTGGTCGTGC CAGAACTGGA GCGTCACGGG TACCCGCGTG GCTTTGCTTG CGGGCTTATC
GCTGCCGGCG GGACGCTTGG GATCATGATT CCGCCCTCGG TGGTGTTCGT GGTTTATGGT
TCGTTGACGA GCACGTCGGT TGCCACGCTG TTTCTGGCCG GGGTGATTCC CGGGCTCTTT
CTTGCTGCCC TACTGGCACT GACGTCGTAT GGTATGGCCA AACGTTACGG CTATGGTGAC
ACCCAGCCGC TGCAACTTAG GGAAATCTGG CGTGCATTCA AGGTGGCGAT GCCGTCCATG
CTAATGCCGG TCGTGGTGCT GGGGGGTATC TACAGCGGCA AATTCACGCC GACGGAAGCA
GCTGCAGTCA GCGTCGTGTA TTCGGTGATT GTTACAAAGT ACGTCTATAA AACGCTAAAG
TGGAGCGATC TGCCGGACAT CTTTATTGAC AGTGCAAAGA GCTCCGCGGT CGTGCTGATC
ATCCTGGCAG CTTCGCTCGG CGTCGGTTTG CTCGCTTCTT TCCTTGGCGC CGCAGATCAA
CTGACGACGT TCCTCATCAG TTTCAACCTG AGTGCTTGGC AGTTCCTGTT GGCCGTCAAC
GTGATCTTAC TGATCCTCGG GTGCTTTTTT GATGGTTTCA CGCTGCTGGT GCTGCTTACT
CCGCTGCTGC TGCCTTCACT CAAGGCCCTC GATATCAGCC TGATTCACTT CGCAATTATT
CTGACGGCCA ACATTGAAAT CGCCGCCATC ACACCGCCCG TAGGGTTCAA TTTGTTTGTT
ATCAGCGGTA TCACCAAGGT TGGACTGACC GAAGTTGCCC GCGGTGTATT GCCGTTCGCC
ATTACCTTGC TCGTTGGTCT CTTTATCCTG ACCTACGTGC CGTCGCTTTC TCTCATGCTT
ACTAAATAA
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| Protein sequence | MAFAVLLFIL LLILLTGVPI AYAIGGIAVL GNQWFDATSF TRLAETQFSS VNSFVIMAIP
FFILAGNVML KGQMARSLFE FMVSLTRGIT GGAAIGATGA CAIFGALTGS SAAAASALAP
VVVPELERHG YPRGFACGLI AAGGTLGIMI PPSVVFVVYG SLTSTSVATL FLAGVIPGLF
LAALLALTSY GMAKRYGYGD TQPLQLREIW RAFKVAMPSM LMPVVVLGGI YSGKFTPTEA
AAVSVVYSVI VTKYVYKTLK WSDLPDIFID SAKSSAVVLI ILAASLGVGL LASFLGAADQ
LTTFLISFNL SAWQFLLAVN VILLILGCFF DGFTLLVLLT PLLLPSLKAL DISLIHFAII
LTANIEIAAI TPPVGFNLFV ISGITKVGLT EVARGVLPFA ITLLVGLFIL TYVPSLSLML
TK
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