| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_4184 |
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| Symbol | |
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| ID | 3961901 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 4653467 |
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| End bp | 4654462 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 637918998 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_525403 |
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| Protein GI | 89902932 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00527297 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTCACC TCAAACGTTT AGTCGGCGCC GCAGCGCTGG TTTTCAGTTG TCTTGTCTCG
GCGCAAGAGC CGATTGTCAT CAAGTTCAGC CATGTGAACC CGGCCCAATC GCCGAAGAAT
CAGGCGGCCG AATATTTCAA GAAGCTCGCC GAAGACGGCA CACATGGACG GGTGAAGATC
GAACTTTACC CGTCCAGCTC GCTATACAAG GATTCAGAGG AATTGGTCGC TCTCCAACTC
GGCTCGGTTC AGATGCTGGC ACCGACGCTG GGGAAATTCG GTCCTATGGG TATGCGAGAC
TTCGAGGTCT TCGACCTGCC TTACCTGTTT GATAGCTTCG ACCAGGTTCA CCTCGTCACG
CAGGGGCCGA TCGGCAAGCA ACTGCTCAAA CAGTTGGAAG CGAAGGGCAT TAAGGGGTTG
GCCTTTTGGG ACAATGGTTT TAAGCAAATG AACGCCAATA AGCCACTGCA CACGCCAGCC
GACTTCAAGG GTCTGAAGAT GCGCATTTTC AGCTCCAAGG TGCTCGACGC CGAGATGCGC
TCTCTTGGTG CCATTCCGCA GGTAATGGCT GCCAGCGAGA TGTACCAAGC CATGCAGACC
GGCTTGGTGG ATGGTGGCGA GAATACAGAG TCGACCTTCT ATCAATTCAA GATGTATGAG
GTTCAGAGCA ACATAACCCT TTCAAACCAC GGATATGTGG GGTATGCCGT GGTTGCGAAC
AAAAAGTTCT GGGAGGGGCT TCCGCCAGAC ATTCGCGTCG TGCTAGACGA TGCCATAGTC
AAGGCGACCG AGTTCGGAAA CCGCGTCGCC AAGAAGGAAA ACGATGATGC TCTCGAAGCC
ATGCGAAAAC TCAATCGCAC CCAAATCATC ACACTGACCA AGTCCGAACG CGACGAATGG
AAAAAAGTGT TGCTCAAGTC ACACCAGTCG GCCGATCGGA TTGACAAAAA TATGCTACAG
GCTATATATA AAGAAACAGC CACCGTGAAA AACTGA
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| Protein sequence | MVHLKRLVGA AALVFSCLVS AQEPIVIKFS HVNPAQSPKN QAAEYFKKLA EDGTHGRVKI
ELYPSSSLYK DSEELVALQL GSVQMLAPTL GKFGPMGMRD FEVFDLPYLF DSFDQVHLVT
QGPIGKQLLK QLEAKGIKGL AFWDNGFKQM NANKPLHTPA DFKGLKMRIF SSKVLDAEMR
SLGAIPQVMA ASEMYQAMQT GLVDGGENTE STFYQFKMYE VQSNITLSNH GYVGYAVVAN
KKFWEGLPPD IRVVLDDAIV KATEFGNRVA KKENDDALEA MRKLNRTQII TLTKSERDEW
KKVLLKSHQS ADRIDKNMLQ AIYKETATVK N
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