| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_4175 |
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| Symbol | |
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| ID | 3961873 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 4644416 |
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| End bp | 4645699 |
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| Gene Length | 1284 bp |
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| Protein Length | 427 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637918992 |
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| Product | TRAP dicarboxylate transporter- DctM subunit |
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| Protein accession | YP_525397 |
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| Protein GI | 89902926 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0614852 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGCCG CCATTATTTT TGTCCTCTTG CTGGTGCTCA TGCTCACCGG CATGCCAATC
TCGATTTCAC TCGGCTTGAC CGTTCTGACC TTTTTGTTTG GCTTTACCCA TGTGCCGCTG
GAGTCGGTGG CGCTCAAGCT CTTTACCGGC ATTGAAAAGT TCGAGATCAT GGCGATCCCG
TTCTTCATCC TGGCGGGTAA CTTTTTGACC CACGGCGGCG TGGCCAAGCG CATGATCAAC
TTTGCCTCCA GCATGGTCGG CCACTGGTAT GGAGGCCTGG GCCTGGCCGG TGTGATGGCT
TGTGCGCTGT TTGCGGCGGT GTCGGGTTCC TCGCCCGCCA CGGTGGTGGC GATCGGCTCG
ATCTTGCTGC CGGCCATGAC CAAAGCGGGT TTTCCCAATA GCTTTGGCGC GGGCGTGATC
ACCACCTCGG GCGCCTTGGG CATTCTGATT CCGCCTTCGA TCGTGATGGT GATGTATTCG
GTGGCGACCA ACACCTCGGT CGGCGCCTTG TTCATGGCCG GCGTGGTACC GGGCATCGCA
CTGGCCTGCG TGTTGGGCGG TGTCACCTGG TATCGGGCCA AGAAGTTCAA CTACCCGCGT
CTGCCCAAGG CGACCTGGGC CGAGCGCTTC AAGGCTTTCA AGACCTCGGC CTGGGGCTTG
CTGCTGATCG TGATCGTGAT GGGCGGCATT TACACCGGCA TGTTCACGCC GACTGAAGCG
GCGGCCATGA GCGCGGTCTA TGCGTTTGTG GTGGCCGTTT TTGTCTACAA GGACATGAAG
CTCAAGGACG TGCCCAAAGT GTTGCTCAAC TCGGCCAACA TGTCGGCGAT GCTGCTCTAC
ATCATCACCA ACGCCGTGCT GTTCTCCTTC ATCATGACCA ATGAGAACAT TCCGCAGGCG
CTGGCCGACT GGATGCTGGG CAACGGCCTG GGCATGGTCA GCTTCTTGCT GGCCGTGAAC
GTGATGCTGC TGCTGGCGGG CAACTTCATG GAGCCCTCCA GCATTGTGCT GATCTTCGCG
CCGATCTTGT TCCCGGTGGC CATGAAGCTG GGCATTGACC CGGTGCACTT TGGCATCATC
ATGGTGGTCA ACATGGAAGT GGGCATGTGC CACCCGCCGG TGGGCCTGAA CCTGTATGTG
GCCTCCGGCA TTACCAAGAT GGGGATTACC GAGCTGACGG TGGCGGTCTG GCCGTGGCTG
CTGGCGATGC TGGGCTTCCT GGTGCTGGTG ACCTACTGGC CGCCCTTGTC AACCTGGTTC
CCCCGCATGC TGGGGATGAT GTAG
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| Protein sequence | MNAAIIFVLL LVLMLTGMPI SISLGLTVLT FLFGFTHVPL ESVALKLFTG IEKFEIMAIP
FFILAGNFLT HGGVAKRMIN FASSMVGHWY GGLGLAGVMA CALFAAVSGS SPATVVAIGS
ILLPAMTKAG FPNSFGAGVI TTSGALGILI PPSIVMVMYS VATNTSVGAL FMAGVVPGIA
LACVLGGVTW YRAKKFNYPR LPKATWAERF KAFKTSAWGL LLIVIVMGGI YTGMFTPTEA
AAMSAVYAFV VAVFVYKDMK LKDVPKVLLN SANMSAMLLY IITNAVLFSF IMTNENIPQA
LADWMLGNGL GMVSFLLAVN VMLLLAGNFM EPSSIVLIFA PILFPVAMKL GIDPVHFGII
MVVNMEVGMC HPPVGLNLYV ASGITKMGIT ELTVAVWPWL LAMLGFLVLV TYWPPLSTWF
PRMLGMM
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