Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_4122 |
Symbol | |
ID | 3961820 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | + |
Start bp | 4598872 |
End bp | 4600221 |
Gene Length | 1350 bp |
Protein Length | 449 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637918946 |
Product | PAS/PAC sensor signal transduction histidine kinase |
Protein accession | YP_525351 |
Protein GI | 89902880 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCTGTGC CACAACCGTC ACCGCTGCAC CATTTGCCCG TCGGAGCCCT CGAAGGCATG GACGAGGCGA CCTGGCTGGA CGTCATTCAC AAGATGGACG AGGTCTATTC CAAGCTGGTG ACCGATGAGA TCGAGCTGGA GGAAAAGAAC GCGCAGCTTG AACAGTCGCA GCAATTCATC TTCAGCCTGC TGTCGGCCAT GAGCGATGTG CTGATCGCCT GCAATCAGAA CGGCATGATC GAAGAAACCA ACGCGGCTTT GTGCGAACTG GTGGGTCTGA GCGAGCAGGC GCTGCGCGGC ACGCCGGTGC TCGGCTTGCT GGCCGACGAA CAAAGTGTGC AGCGCTGGCA GTTGGCGATG TACCAATCGG CCTCGCATGA CGCTGCGGTG GTGGAGATCA ATCTGCGCAG CGCCAGTGGT GAAGTGGTCG CGGTGGACTT CAATTGCACC CCCCGGCACA ACAGCGCCGG TCGCCAGGTC GGCCGGGTGC TGGTGGGACG CCCCCTGGGC GAGCTCAAAC GCGCCTACCA GCAGTTGCGC CAGGCGCACG AGGCCTTGAA AAATGCGCAG GCGCAACTGC TGCATTCGGA AAAGATGGCC TCGCTGGGGC GGCTGGTGGC TGGCGTGGCG CACGAGCTCA ACAACCCGAT CAGTTTTGTG CTGGGCAATG TGCATGTGCT GCAACGCTAC GGCGCACGCC TGAGCCGCTA CCTGCAGGCG CTGCACCAGC TTGACCTGCC CGCGCCGGTG CAGGCGCTGC GCGCTGAGCT GCGTATCGAC CACTTGGTGG GCGACCTGCC TTCGCTGATG GCGGGCACGT TAGAGGGCGC CCAGCGCACC ACCGACATCG TCAACGGCCT CAAGCGCTTT GCCACCGCGG CGCACGAGGA CGTGACGCAG GTGGAACTCA ACGCGGTGGT GGAGCGCGCC ATGCTGTGGG TCAAAAAAGG CACGTCGCCC CGGTTCGAGA TGGTCTGGAC GCGTGGCCCC GATTGTTTTG TCACCGGCAA CGCCGGGCAG TTGCTGCAGG TGGTGATGAA CCTGATCCAG AACGCTTCGG ACGCCGCCAG CACAGACGAC GCCACTGCGC CGCAATTGCG CATCAGCCTG CAGCAAGATG GCGGGCAAGT GCGTCTGCGC TTTGCCGACA ACGGCCCAGG CATTGCACCT GAACATTTGT CGCGCGTCTT TGATCCGTTT TTTACCACCA AGAGCGTGGG CAAAGGCACC GGTCTGGGTC TGTCGATCAG CTACGGCCTG GTTGAGCAAC ACGGCGGGCA GCTCAGCGCC GCCAACCTGC CGCAAGGAGG CGCGGTGTTT ACGCTGACAT TGCCGATGCC AAAGGCATAA
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Protein sequence | MPVPQPSPLH HLPVGALEGM DEATWLDVIH KMDEVYSKLV TDEIELEEKN AQLEQSQQFI FSLLSAMSDV LIACNQNGMI EETNAALCEL VGLSEQALRG TPVLGLLADE QSVQRWQLAM YQSASHDAAV VEINLRSASG EVVAVDFNCT PRHNSAGRQV GRVLVGRPLG ELKRAYQQLR QAHEALKNAQ AQLLHSEKMA SLGRLVAGVA HELNNPISFV LGNVHVLQRY GARLSRYLQA LHQLDLPAPV QALRAELRID HLVGDLPSLM AGTLEGAQRT TDIVNGLKRF ATAAHEDVTQ VELNAVVERA MLWVKKGTSP RFEMVWTRGP DCFVTGNAGQ LLQVVMNLIQ NASDAASTDD ATAPQLRISL QQDGGQVRLR FADNGPGIAP EHLSRVFDPF FTTKSVGKGT GLGLSISYGL VEQHGGQLSA ANLPQGGAVF TLTLPMPKA
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