| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_4120 |
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| Symbol | |
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| ID | 3961818 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 4596339 |
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| End bp | 4597361 |
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| Gene Length | 1023 bp |
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| Protein Length | 340 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637918944 |
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| Product | uptake hydrogenase accessory protein HupU |
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| Protein accession | YP_525349 |
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| Protein GI | 89902878 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1740] Ni,Fe-hydrogenase I small subunit |
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| TIGRFAM ID | [TIGR00391] hydrogenase (NiFe) small subunit (hydA) |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTGAAA CTGGAGATCA CATGGCACTG AACGTGTTGT GGTTGCAATC CGGCGGTTGC
GGGGGCTGCA GTATGTCGCT GCTGTGCGCC GATACGACCG ACTTCCCGGC CCTCTTGCGC
AGCAACGGCA TCAGGCTGCT GTGGCATCCC GCGCTGTCGC TGGCGGGCGA GCAGGACTTG
ATCCAGCTGC TGGAACGCTG CCTGGCAGGC CAGTTGCAAC TGGACGCACT GTGTATTGAA
GGGGCGCTGC TACGCGGCCC GCAGGGTACG GGGCGTTTCC ACAGGCTGGC TGGCACCGGC
GTCGCGATGA CCGATTGGGT GCGCCGGCTC GCCGGCGTGG CCGCGCATGT GGTGGCGGTC
GGCAGTTGCG CGGCCTGGGG CGGCATCACG ACCGCGGGCC GCAACCCGAC CGATGCCTGC
GGGTTGCAGT ATGAAGATGA TCAGCCAGGC GGCCTGCTGG GTACCGACTT TCGGGCTGGA
GCTGGGCTGC CGGTGATCAA CATCGCGGGT TGCCCGACCC ACCCCGGCTG GGTACTCGAC
ACGCTGATGA TGCTGGCCGC CCATCAACTG ACCGAAGAGG ACCTTGACCC CTTGGGGCGG
CCGCGTTTTT ATGCCGACCA ACTGGTGCAC CACGCCTGCA CCCGCAACGA GTATTACGAA
TACAAGGCCA GTGCGGCCAA GCCCACCGAC CTGGGTTGCC TGATGGAAAA CATGGGTTGC
AAGGGCACGC AGGCGCACGC CGACTGCAAC ACCCGGCTCT GGAACGGTGA TGGTTCCTGC
CTGCGCGGCG GCTTTGCCTG CATCAACTGC ACCGCGCCGG GTTTTCAAAG CCCCGGTCAT
CCGTTTCACA TCACCCCGAA GCTGGCGGGC ATCCCGATCG GCCTGCCCGT GGACATGCCC
AAGGCCTGGT TTGTGGCGCT GGCTTCCTTG TCCAAGAGCG CCACGCCCCG GCGCGTCAAG
GTCAATTCGC ACAGCGACCA CGTGGTGCTG CCGCCAGTGG CTCGCAAGAC GCGGCTGCGC
TAA
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| Protein sequence | MLETGDHMAL NVLWLQSGGC GGCSMSLLCA DTTDFPALLR SNGIRLLWHP ALSLAGEQDL
IQLLERCLAG QLQLDALCIE GALLRGPQGT GRFHRLAGTG VAMTDWVRRL AGVAAHVVAV
GSCAAWGGIT TAGRNPTDAC GLQYEDDQPG GLLGTDFRAG AGLPVINIAG CPTHPGWVLD
TLMMLAAHQL TEEDLDPLGR PRFYADQLVH HACTRNEYYE YKASAAKPTD LGCLMENMGC
KGTQAHADCN TRLWNGDGSC LRGGFACINC TAPGFQSPGH PFHITPKLAG IPIGLPVDMP
KAWFVALASL SKSATPRRVK VNSHSDHVVL PPVARKTRLR
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