| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_4106 |
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| Symbol | |
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| ID | 3961804 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 4583146 |
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| End bp | 4584603 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637918930 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT |
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| Protein accession | YP_525335 |
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| Protein GI | 89902864 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0438089 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGGAC CCTTCGAAGG CCACAACATC GCGCGGTTCA CGCTAGCGAC ACTGGCCGTG
GTGATGCTCG GCGCCTGCGC CGGCTTGCCC ACGCCCGGCG ACGCTGTGTC AAATGCACCG
GCAGCCACGG CCGCACCGTC GCAATGGCAG GCCCCGCTGC CACACGGCGG CCAACTCACT
GACCTGGCCC GCTGGTGGCA ACAGTTCGAC GATCCGCTGC TGACGCAACT CATCGACGCG
GCACAAGCGG TGAGCCCCAC GCTCGCTTCG GCGCAGTCGC GCATCGCGCA GGCGCGCGCG
GCGCGCGTGT CTGCCGCCGC CGCCCTCGGC CCGACACTCA ATGCCAATGC CAGCGCGGTT
CGTGGTCGCC AGGACTTGAG CCTGCCATTG GGCAACACCA CGTCCGTCGG CCTCCAGGCG
GCATGGGAGG TCGACCTCTT CGGCGCCAAC GCGGCGGCGC GTGACGCAGC GCAGGCCCGG
CTGGCCGGCG CTCAGGCTTC CTGGCACGAC GCCCGCGTCT CGGTGGCGGC CGAGGTGGCC
GGCGCCTACG TCAGCCTGCG CGCCTGCGAG GCCCAACTCG TGCAAACGCA AATCGACGCC
AACTCGCGCG CCGACACCGC GCGCCTGACC GAACTGGCGG CAAAGGCGGG CTTGCAAGCC
ACCGCCAGCG TTGCGCTGGC GCGAGCCAGC GCCGCCCAGG GCAGAAACCT GCTCACTCAG
CAGCGCGCGC TGTGCGACCT GGGCGTCAAA TCGATGGTGG CCCTCACGGG CGTGGCCGAG
CCAGCCTTGC GCAGTCAACT CGCGCCGGCC AGCGCGCGCT TGCCACAGCC CGCGCAGATC
GTGGTCGCCA GCATTCCGGC CGACGTGCTG GCGCAACGCC CCGACCTGTT CAGTGCCGCG
CGTGAGGTGC TGGCCGCCAG CGCCGACCTG AGCCAGTCGC AGGCGCAGCG CTACCCGCGC
ATTGTCTTGA ACGGCGCCAT AGGCGCGGCG CGTTTCTCAA GCGCTGCGGA CACGCTCGAC
GGCCCGGTCT GGAGCCTGGG CCCGGTGTCG GTGGTCATGC CCTTGTTCGA CGGCGGGGCG
CGTCGTGCCA ACGTGGAGGC GGCGCGCGCG CGCTACGTGG AGGCCGGCGT CATCTACGCG
AGCCGGCTGC GCGTGGCGGT TCGCGAAGTC GAGGAAGCCC TGGTCGCGCT GCACAGCACG
GCCGCGCGCG GCAGCGACGC TCTGGTGGCG ACCGAGGGCT TCGCCGCGTC TTACCGCGCC
GCCGACGAAC GCTTCAGGAG CGGCCTGGCC AGCCTGTTCG AACTCGAGGA TGCGCGCCGC
AGCGCCGTGC AGGCGCAGAG TGCGTTGATC GAATTGCAGC GCGAACGCGT GATGGCTTGG
ATCTCCCTCT ACCGGGCTCT TGGCGGGGGC TGGATTGCCG ACGCGCAGAG CGCAGCAGTG
ACCGCCACCC GGAACTGA
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| Protein sequence | MTGPFEGHNI ARFTLATLAV VMLGACAGLP TPGDAVSNAP AATAAPSQWQ APLPHGGQLT
DLARWWQQFD DPLLTQLIDA AQAVSPTLAS AQSRIAQARA ARVSAAAALG PTLNANASAV
RGRQDLSLPL GNTTSVGLQA AWEVDLFGAN AAARDAAQAR LAGAQASWHD ARVSVAAEVA
GAYVSLRACE AQLVQTQIDA NSRADTARLT ELAAKAGLQA TASVALARAS AAQGRNLLTQ
QRALCDLGVK SMVALTGVAE PALRSQLAPA SARLPQPAQI VVASIPADVL AQRPDLFSAA
REVLAASADL SQSQAQRYPR IVLNGAIGAA RFSSAADTLD GPVWSLGPVS VVMPLFDGGA
RRANVEAARA RYVEAGVIYA SRLRVAVREV EEALVALHST AARGSDALVA TEGFAASYRA
ADERFRSGLA SLFELEDARR SAVQAQSALI ELQRERVMAW ISLYRALGGG WIADAQSAAV
TATRN
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