| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_4105 |
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| Symbol | |
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| ID | 3961803 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 4581957 |
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| End bp | 4583108 |
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| Gene Length | 1152 bp |
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| Protein Length | 383 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637918929 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_525334 |
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| Protein GI | 89902863 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0739298 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAACT ACTTCAAACC TCGATGGATC GCACTTGCGG TCGCGCTGGC CAGCCTGCTT
GGCGTGGCCT CGTTTGCCCT CACCGAGCGA GCGTCCGACG CCAAAAAGCC CGCGACCGCG
GACAAGCCCG CACTGACGGT CAACGCCACC CAGCCGCAAA GCACAACGCT GCCGCGGAAA
ATCAGCGCCA ACGGCAACCT GGCCGCCTGG CAGGAAGCCA GCATCGGCAC CGAGGCCAAC
GGCCTGCGGC TGGCCGAGGT GCGGGTCAAC GTGGGCGACG TGGTGAAACG CGGCCAGGTG
TTGGCCACGT TCGCTCCCGA CACGATTCAG GCCGACCTGG CCCAGATGCG CGCAGGCATG
GCCGAAGCCG AGGCCACGCT GGCCGAGGCG GCCGCCAACG CCCAGCGCGC ACGCGAACTG
CAAACCACCG GCGCCTTGAG TGCGCAGCAG ATCAGCCAGT ACCTCACCGC CGAGCGCACC
GCGCAGGCCC GGGTCGATGC CCAGCGCGCC ATGGCCACAA CGCAGCAGCT GCGCCTGGCC
CAAACCCAGG TGCTGGCGCC CGACAGCGGC GTGATTTCGG CGCGCAGCGC CACCGTGGGC
GCGGTGTTGC CGGCCGGGCA GGAGCTCTTT CGCATGATTC GCCAGGGCCG GATCGAGTGG
CGCGCTGAGA TCCCGGCCGT CGACTTGGCA TCGCTCAGGT CCGGCATGGT CGCCACGATC
ACGCCGGCCG GCGGTGTTCC CATCAAGGGC ACCGTGCGCA TGGTCGCACC GACGGTCGAT
GCGGCCACCC GCAACGGGAT CGTCTATGTC GACCTGCCGG CGCCCGGCGC GGCCAAGGTC
GGCATGTTCG CGCGTGGCGA GTTCACGCTC GGCAGCGCCG AGGCGCTCAC GCTGCCGCAG
ACGGCGGTGC TGCTGCGCGA CGGCTTCAGC TACGTGCTGC GCATCGGCCC CGATTCGAAG
GTCGCGCAGA CCAAGGTGTC GATCGGACGC CGCGCCGGCG ACCGCGTCGA GATCACCGGC
GGTCTCGATC CGAAAGCACG CGTCGTTGCC GGCGGCGGCG GTTTCCTGTC CGACGGCGAC
ACGGTGCGGG TGGTCGAGAC GGCCACGCCG GTGAAGACCG CGTCGAACGC CAGCGGCGTG
TCAGCCAAGT GA
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| Protein sequence | MKNYFKPRWI ALAVALASLL GVASFALTER ASDAKKPATA DKPALTVNAT QPQSTTLPRK
ISANGNLAAW QEASIGTEAN GLRLAEVRVN VGDVVKRGQV LATFAPDTIQ ADLAQMRAGM
AEAEATLAEA AANAQRAREL QTTGALSAQQ ISQYLTAERT AQARVDAQRA MATTQQLRLA
QTQVLAPDSG VISARSATVG AVLPAGQELF RMIRQGRIEW RAEIPAVDLA SLRSGMVATI
TPAGGVPIKG TVRMVAPTVD AATRNGIVYV DLPAPGAAKV GMFARGEFTL GSAEALTLPQ
TAVLLRDGFS YVLRIGPDSK VAQTKVSIGR RAGDRVEITG GLDPKARVVA GGGGFLSDGD
TVRVVETATP VKTASNASGV SAK
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