| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_4088 |
|---|
| Symbol | |
|---|
| ID | 3961786 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 4562588 |
|---|
| End bp | 4563769 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637918912 |
|---|
| Product | hydrogenase (NiFe) small subunit (hydA) |
|---|
| Protein accession | YP_525317 |
|---|
| Protein GI | 89902846 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1740] Ni,Fe-hydrogenase I small subunit |
|---|
| TIGRFAM ID | [TIGR00391] hydrogenase (NiFe) small subunit (hydA)
[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.541909 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGATA TGAATGAGCT ATTTGACTTG GGGTCCGATG CGTTCCATGG CGTCGAGCAA
CGCCTGGGTA TGTCAAGGCG TGACTATCTG CAATTTTGCA CCACGCTAGC GGTCACCATG
GGACTGCCAA AAGGCGCCGA AGCTGCGGTG GCCAAGGCAA TAGAAACCAG CCAGCGTCCA
TCGGTGATCT GGCTGCACTT TCAGGAGTGC ACGGGCTGCT CGGAGTCGCT GTTGCGGGCT
GAACATCCAA CGCTGGAAAA GCTGATTCTG GACGTCATCT CGCTCGACTA CCACGAGACT
TTGATGGCCG CCGCCGGGCA CCAGGCCGAG GCCGCCCGCA AAGACGCGAT GAAGACCCAC
AAAGGCAAAT ATGTGCTGGT GGTTGAAGGC GCCATTCCGG TCAAGGACAA CGGCATTTTC
TGCAAGATCG GGGACCACAC CGCGATTGAT CTGGTCAAAG AATGTGCCGC TGATGCGGCG
GCGGTGATCG CCATTGGCTC TTGTGCCTCC TGGGGAGGTA TGCCGTCTAC CGGCCCCAAT
CCGACCGGCG CCTCCAGTGT GGCCGAGGTG CTGGGCAAGT CTGTGGTCAC CATCCCTGGT
TGCCCGCCCA ACCCCTATAA CTTTCTCGCC ACCGTGGTGC ACTTTCTGAC CTTTGGCAAG
CTACCTGACG TCGACAAATT GGGGCGCCCC AAATTTGCCT ACTCGCGCCT GATTCATGAA
AACTGTGAAC GCCGCGCGCA CTTCGATGCC GGGCGCTTTG CGATGGAGTT TGGTGATGCG
GGCCATCGTC AGGGCTACTG CCTCTACAAG CTGGGCTGCA AAGGGCCGGA AACCTATGCC
AATTGCTCAA CCATAGGATT TGGCGACGCG GGCGAAAACA ACTGGCCGGT CGGCTGTGGC
CACCCCTGCA TCGGTTGCAG TGAAAAAGGC GTGGGCTTTA CCAAGCCGAT TCATCAGGTC
GCCACAGTGA TCAATATCGT GCCACCGCAA CAGTATCCGC GCATTGTGGA AGAACAAGGC
AAGGGTGCGT CCTTTGCCTC TGCTGCTGCG CTCGCTGCGT TGGCCGGCGC CGCGGCTGGC
GCTGCCGTGA TGTTGACGCG CAATCTGGGC TTGTCGCACG CGGCATCCGA GGCCGAGCGC
GCCAAAGCTG AAGGCAAGTC CAAAGACCAG GCTCAGGTGT AA
|
|---|
| Protein sequence | MGDMNELFDL GSDAFHGVEQ RLGMSRRDYL QFCTTLAVTM GLPKGAEAAV AKAIETSQRP
SVIWLHFQEC TGCSESLLRA EHPTLEKLIL DVISLDYHET LMAAAGHQAE AARKDAMKTH
KGKYVLVVEG AIPVKDNGIF CKIGDHTAID LVKECAADAA AVIAIGSCAS WGGMPSTGPN
PTGASSVAEV LGKSVVTIPG CPPNPYNFLA TVVHFLTFGK LPDVDKLGRP KFAYSRLIHE
NCERRAHFDA GRFAMEFGDA GHRQGYCLYK LGCKGPETYA NCSTIGFGDA GENNWPVGCG
HPCIGCSEKG VGFTKPIHQV ATVINIVPPQ QYPRIVEEQG KGASFASAAA LAALAGAAAG
AAVMLTRNLG LSHAASEAER AKAEGKSKDQ AQV
|
|---|
| |