| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_4069 |
|---|
| Symbol | |
|---|
| ID | 3961748 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 4537174 |
|---|
| End bp | 4538454 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637918893 |
|---|
| Product | L-carnitine dehydratase/bile acid-inducible protein F |
|---|
| Protein accession | YP_525298 |
|---|
| Protein GI | 89902827 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCAAG CAGACCCACA AGCCACCGCG CCAGCGGGCG CCCTGTCCCA CCTCAAGGTG
CTGGATCTCT CCCGCGTCCT CGCCGGCCCC TGGTGCACCC AGATGCTGGC CGACCTGGGC
GCTGACGTGA TCAAGGTCGA GCGCCCAGGT GCCGGCGACG ACACCCGCCA TTGGGGCCCG
CCGTTCCTCA AGGACGCAGA CGGCAACGAC ACGACCCAGG CCACTTATTT CACCGCCTGC
AACCGCAACA AACGCGCCAT CACGCTCGAC ATGGCCAAGC CAGAAGGCCA GGCGCTGATC
CGCCAGCTGG CGCTGCAAAG CGACATCCTG GTGGAGAACT TCAAGGTCGG CGGCCTCAAG
CAATACGGCC TTGATTTCGA GAGCCTGCAC GCCATCAACC CGCGCCTGAT CTACTGCTCG
GTCACCGGCT TTGGCCAGGA TGGCCCGTAC GCCGAGCGCG CCGGCTACGA CCTGATGATC
CAGGCCATGA GCGGCCTGAT GAGCATCACG GGGGAGGCCG ATGCGACGCC CGGCGGCGGC
CCGATGCGCG TCGGCGTGGC GGTGATCGAC ATCTTCACCG GCGTCTATGC CACCAGCGCC
ATTCTGGCGG CACTCGAAGT GCGCCACCGC ACCGGTCAGG GCCAGCACAT CGACATGGCC
CTGCTCGATG TCGGCATGGC CGTGCTGGGC AACCAGGCGG CGGGCTACCT GAACACCGGC
GCCGTGCCGC AGCGCCAAGG CAACACCCAT CCGAGTCTGG CGCCGTACCA GACCTTTCCC
ACGCTGGACG GCGCCATGCT GCTGGCGGTG GGCAACGACG GCCAGTTTGC CCGCTTTTGT
CAGGCCGCCG AGCACCCCGA GTGGGCAAGC GACCCCCGTT TTGCCAGCAA CACCTTGCGC
GTCAAACACC GCGACGCCTT GATCCCGGCG CTGCAGGCGC TCACCCAAAC GCGCACCACC
GCGCAGTGGG TTGCCCTGCT GGAAGACAAA GCCGTGCCCT GCGGCCCGAT CAACGACCTC
GGCCAGGCTT TTGCCGACGC CCAGGTGCAG GCCCGTGGTT TAGTGGTCAA TCAGGCTGTA
GCCACCGTCA ATACTGCGCA ATCAGCTATA AAACATATAG CAAACATCGT CACGGTGGCG
AGCCCGCTGC GCTTGACGGC CACGCCGCCC GTGCTGCGCC GGGCGCCACC GTCCCTGGGG
CAACACACCG AGGAGGTGTT GGCCGAGTTG GGGCTGGATG CGGCGGCGAT GGTTGCCTTG
CGCGCGGCCG GGGTGGTGTA G
|
|---|
| Protein sequence | MNQADPQATA PAGALSHLKV LDLSRVLAGP WCTQMLADLG ADVIKVERPG AGDDTRHWGP
PFLKDADGND TTQATYFTAC NRNKRAITLD MAKPEGQALI RQLALQSDIL VENFKVGGLK
QYGLDFESLH AINPRLIYCS VTGFGQDGPY AERAGYDLMI QAMSGLMSIT GEADATPGGG
PMRVGVAVID IFTGVYATSA ILAALEVRHR TGQGQHIDMA LLDVGMAVLG NQAAGYLNTG
AVPQRQGNTH PSLAPYQTFP TLDGAMLLAV GNDGQFARFC QAAEHPEWAS DPRFASNTLR
VKHRDALIPA LQALTQTRTT AQWVALLEDK AVPCGPINDL GQAFADAQVQ ARGLVVNQAV
ATVNTAQSAI KHIANIVTVA SPLRLTATPP VLRRAPPSLG QHTEEVLAEL GLDAAAMVAL
RAAGVV
|
|---|
| |