| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_4055 |
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| Symbol | |
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| ID | 3961734 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 4519903 |
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| End bp | 4523061 |
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| Gene Length | 3159 bp |
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| Protein Length | 1052 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637918879 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_525284 |
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| Protein GI | 89902813 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGGTT CCGAGGGTAA CAGCGGCATA CCTGCCACGG TGTCTGCGCG GCAGTCGCTC
AAAACCAAAG TCACGCTGAT TACGCTGCTG GTCTTTGTGC TGAGTCTGTG GTCGCTGTCG
TATTACGCCA GCCGCATGTT GCGCCAGGAC ATGGAGCGTC TGCTGGGGGA GCAGCAGTTT
GCCACCGTGT CGCAGGTGGC GGCGCAGCTG AATCAGGCCC TGCAGGCTCG GGTCAGTGCC
CTGGAGACGG TGGCGCGCGC GATCAGTCCA GCGCTGCTGG ACAAGCCGCA GGCGCTGCAG
GTCTTTCTTG AGCAACAGAT CATTTTAAAA ACGCTGTTCA ATGCTGGTGT GCATGTCCTC
GGGCCCGACG GTGGGGTGCT TGGGCTGGTG CCTGAGGCCA GCCGCGTCGG CGCGGACTAT
TTCCAGAACC CGACCGTGCA GGCGGCGCTG TCGGAAGGAA AAACCAGCAT CGGCGCGCCG
ACACACGAGG TCTTGCTGAA GCAGCCTGTG TTCCCGGTCA TCACCCTCAT CCGCGATGCT
GGCGGCCGAG TGATCGGCGC CCTGGCAGGC GTGACCAACC TGGACCAGCC CAGTTTTCTG
GACATGATTT CGCAAAGCCG CTACGGCAAG ACCGGTGGCT ATGTGCTGAT TGCAGCGCAG
CAGCGCCGGG TGCTCGCCGC CACCGACAAA AGCCGGGTCA TGGAAGTCCT GCCTGCACCC
GGCGGCAACC CAGCGATTGA TCGCTTTCTT CAAGGTGAGG AGGGCTCGAC CGTCATGCGC
AATCCGCTCG GACTCGAGAT ACTGGCTTCC GACAAAAGCC TGCCGGCAGC GGGGTGGGTG
CTGGCTGCGG TGCTGCCCAC CGCCGAGGCC TTTGCCCCGG TGCGCGCCAT GCAACAGCGC
ATGCTGCTCG CCACCAGCCT GCTAACGCTG CTGGCGGGTC TGGTGGTCTG GTGGACGATT
AAGCGCCAGC TGGCGCCACT GCTGGCGACC GCGCGCCGGC TGGCGGCCAT GGCCGATGAA
AAACAAGCGC TGCGAGCCTT GCCGGTGACC CACCCGGATG AAATCGGACA GGTTGTCAAA
GGTTTCAATC GCCTGCTGGG CACCCTGGGT CAGCGCGAGG CCTTGTTGCA GCAAATCCTC
GACACGTCGA GCGTGGCGAT TTTTCTGGTG GATCGTCAAG GCCGCATCAC GAAAGCCAAC
CAGCGCATGG CCACGCTGTT TGGCTACCCG CTCCATGAAT TGCAGGGCAT GGAATACGTG
GCGCTGGTGC ACCCCGCGCA ACGCGAGACC GGGCGCAAGA ATATGCTGGC CCTGCTGGAC
AGCGCCCTGC AGTCAGTGGA TCTGGAGCGA CTGTATTGGC GCGCCGACCA GACCGAATTC
TGGGGCCACC TGACCGGCCA GCGTTTTGTG GATGGCAACG GTGAAGAACA AGGCCTGGTC
GGTGTGATTG CCGACATTAC CCAGCGCCGC CAGACAGAGG CCGAGCTGCG CATCGCCGCC
ATTGCCTTCG AGTCAGAGCA GGGCATGGCC ATTACCGACC CGCAGGGTGT GATGCTGCGC
GTCAACCGGG CCTTCAGCGC GATTACCGGC TACAGCGCGC CGGAGGCGGT CGGTCAAAAC
CCGCGCCTGC TCAGCTCCGG ACGCCACGAC GCCGCCTTTT ATGCAGCCAT GTGGGACAGC
CTGGTGCGTG AGGGTGCCTG GCAGGGCGAA ATCTGGAACC GGCGCAAAAA CGGCGAGGTG
TTTCCTGAAT GGCTCACCAT CAGCGCGGTC AAAGACCCGG CCGGGCAAGC GACGCACTAT
GTGGCCACAT TTACCGACCT CAGCACGCGC AAGTCGGCGG AGGATCAGAT CAAGAGTCTG
GCTTTTTATG ACACCTTGAC CGGTTTGCCC AACCGCCGCC TGCTGCTGGA TCGGCTGAAA
CAAGCGCTGG CCAGCGGTGC GCGGCACCGG CGCCAAGGCG CGCTGCTGTA CATTGACCTG
GACGACTTCA AGACCCTCAA CAACACCTAC GGCCATGATG TGGGCGACCA GTTGCTGCAG
GAGGTGGCGC AGCGTTTGAG CCACTATCTG CGCGCCGGCG ACACGGTGGC GCGTCCGGGC
GGTGACTCCT TTGTGGTGCT GCTGGAGGCG CTGAGCACGA ACTCGGTGGA GGCCGCAACC
GAGGCCGAAA ACACCGGTGA AAAAATCCGG CTCGCGCTCA GCCAGCCGTA TCAGATCGCC
GATCATGCGC ATCGCAGCAC GGCCAGCATC GGCGTCACCC TGTTTGACGA CCGGCAGCAA
GAAGGCATTG ATGAGCCCTT GAAGCGGGCT GAACTGGCCA TGTACCAGGC CAAGACGGCC
GGGCGCAACA CATTGCGCTT CTTTGACCCG CAGATGCAGA CCGCCGTCAT GGCCATGGCG
GCGCTGGAAG CCGATTTGCG CGAGGCGGTG CGCAGCAACC AGTTTCTTCT GTACTACCAG
GCCCAGGTCA GCGGTGAGCG CCAGGTTGCC GGCGTGGAAG CGCTGGTGCG CTGGCAGCAT
CCGGTGCGTG GTCTGGTGCC GCCGGCCGAG TTCATCCCGC TGGCCGAGCA GACCGGCCTG
ATATTGCCCC TGGGCCAATG GGTGCTGGAA ACCGCCTGCG CCCAGTTGGC GGCCTGGGCC
AGCCAGCCCG AACGCGCGCA TCTCACGGTC GCGGTCAATG TCAGCGCGTT GCAGTTTCAC
CAGGCCGACT TTGTGGCGCA AGTGCTGGCG GCGCTCAAGC GCGCCGGCGC CAACCCGCAG
CGCCTCAAGC TTGAGCTCAC GGAGAGCTTG CTGGTGCACG ATGCAGAAGA CGTCATCGCC
AAGATGATCA CCTTGAAAGA ACAGGGCGTG GGCTTCTCGC TGGACGACTT TGGCACCGGG
TATTCATCGC TGTCTTACCT CAAGCGGCTG CCGCTGAACC AACTCAAAAT CGACCAGGGC
TTTGTGCGCG ACATCCTGCA CGACGCCAAC GACGCCGCCA TCGCCAAGAT GGTCGTCGCG
CTGGCCGATA CCCTGGGCCT GTCAGTGATC GCCGAGGGGG TGGAAACCGA GGCCCAGCGC
GACTTTCTGG CAGCCCAGGG TTGCCACGCT TATCAGGGCC ATTTGTACAG CCGCGCGCTG
CCGATTGACG CCTTCGAGGC GTTCATGCGG CAGGTTTGA
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| Protein sequence | MTGSEGNSGI PATVSARQSL KTKVTLITLL VFVLSLWSLS YYASRMLRQD MERLLGEQQF
ATVSQVAAQL NQALQARVSA LETVARAISP ALLDKPQALQ VFLEQQIILK TLFNAGVHVL
GPDGGVLGLV PEASRVGADY FQNPTVQAAL SEGKTSIGAP THEVLLKQPV FPVITLIRDA
GGRVIGALAG VTNLDQPSFL DMISQSRYGK TGGYVLIAAQ QRRVLAATDK SRVMEVLPAP
GGNPAIDRFL QGEEGSTVMR NPLGLEILAS DKSLPAAGWV LAAVLPTAEA FAPVRAMQQR
MLLATSLLTL LAGLVVWWTI KRQLAPLLAT ARRLAAMADE KQALRALPVT HPDEIGQVVK
GFNRLLGTLG QREALLQQIL DTSSVAIFLV DRQGRITKAN QRMATLFGYP LHELQGMEYV
ALVHPAQRET GRKNMLALLD SALQSVDLER LYWRADQTEF WGHLTGQRFV DGNGEEQGLV
GVIADITQRR QTEAELRIAA IAFESEQGMA ITDPQGVMLR VNRAFSAITG YSAPEAVGQN
PRLLSSGRHD AAFYAAMWDS LVREGAWQGE IWNRRKNGEV FPEWLTISAV KDPAGQATHY
VATFTDLSTR KSAEDQIKSL AFYDTLTGLP NRRLLLDRLK QALASGARHR RQGALLYIDL
DDFKTLNNTY GHDVGDQLLQ EVAQRLSHYL RAGDTVARPG GDSFVVLLEA LSTNSVEAAT
EAENTGEKIR LALSQPYQIA DHAHRSTASI GVTLFDDRQQ EGIDEPLKRA ELAMYQAKTA
GRNTLRFFDP QMQTAVMAMA ALEADLREAV RSNQFLLYYQ AQVSGERQVA GVEALVRWQH
PVRGLVPPAE FIPLAEQTGL ILPLGQWVLE TACAQLAAWA SQPERAHLTV AVNVSALQFH
QADFVAQVLA ALKRAGANPQ RLKLELTESL LVHDAEDVIA KMITLKEQGV GFSLDDFGTG
YSSLSYLKRL PLNQLKIDQG FVRDILHDAN DAAIAKMVVA LADTLGLSVI AEGVETEAQR
DFLAAQGCHA YQGHLYSRAL PIDAFEAFMR QV
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