Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_4055 |
Symbol | |
ID | 3961734 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | - |
Start bp | 4519903 |
End bp | 4523061 |
Gene Length | 3159 bp |
Protein Length | 1052 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637918879 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_525284 |
Protein GI | 89902813 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGGTT CCGAGGGTAA CAGCGGCATA CCTGCCACGG TGTCTGCGCG GCAGTCGCTC AAAACCAAAG TCACGCTGAT TACGCTGCTG GTCTTTGTGC TGAGTCTGTG GTCGCTGTCG TATTACGCCA GCCGCATGTT GCGCCAGGAC ATGGAGCGTC TGCTGGGGGA GCAGCAGTTT GCCACCGTGT CGCAGGTGGC GGCGCAGCTG AATCAGGCCC TGCAGGCTCG GGTCAGTGCC CTGGAGACGG TGGCGCGCGC GATCAGTCCA GCGCTGCTGG ACAAGCCGCA GGCGCTGCAG GTCTTTCTTG AGCAACAGAT CATTTTAAAA ACGCTGTTCA ATGCTGGTGT GCATGTCCTC GGGCCCGACG GTGGGGTGCT TGGGCTGGTG CCTGAGGCCA GCCGCGTCGG CGCGGACTAT TTCCAGAACC CGACCGTGCA GGCGGCGCTG TCGGAAGGAA AAACCAGCAT CGGCGCGCCG ACACACGAGG TCTTGCTGAA GCAGCCTGTG TTCCCGGTCA TCACCCTCAT CCGCGATGCT GGCGGCCGAG TGATCGGCGC CCTGGCAGGC GTGACCAACC TGGACCAGCC CAGTTTTCTG GACATGATTT CGCAAAGCCG CTACGGCAAG ACCGGTGGCT ATGTGCTGAT TGCAGCGCAG CAGCGCCGGG TGCTCGCCGC CACCGACAAA AGCCGGGTCA TGGAAGTCCT GCCTGCACCC GGCGGCAACC CAGCGATTGA TCGCTTTCTT CAAGGTGAGG AGGGCTCGAC CGTCATGCGC AATCCGCTCG GACTCGAGAT ACTGGCTTCC GACAAAAGCC TGCCGGCAGC GGGGTGGGTG CTGGCTGCGG TGCTGCCCAC CGCCGAGGCC TTTGCCCCGG TGCGCGCCAT GCAACAGCGC ATGCTGCTCG CCACCAGCCT GCTAACGCTG CTGGCGGGTC TGGTGGTCTG GTGGACGATT AAGCGCCAGC TGGCGCCACT GCTGGCGACC GCGCGCCGGC TGGCGGCCAT GGCCGATGAA AAACAAGCGC TGCGAGCCTT GCCGGTGACC CACCCGGATG AAATCGGACA GGTTGTCAAA GGTTTCAATC GCCTGCTGGG CACCCTGGGT CAGCGCGAGG CCTTGTTGCA GCAAATCCTC GACACGTCGA GCGTGGCGAT TTTTCTGGTG GATCGTCAAG GCCGCATCAC GAAAGCCAAC CAGCGCATGG CCACGCTGTT TGGCTACCCG CTCCATGAAT TGCAGGGCAT GGAATACGTG GCGCTGGTGC ACCCCGCGCA ACGCGAGACC GGGCGCAAGA ATATGCTGGC CCTGCTGGAC AGCGCCCTGC AGTCAGTGGA TCTGGAGCGA CTGTATTGGC GCGCCGACCA GACCGAATTC TGGGGCCACC TGACCGGCCA GCGTTTTGTG GATGGCAACG GTGAAGAACA AGGCCTGGTC GGTGTGATTG CCGACATTAC CCAGCGCCGC CAGACAGAGG CCGAGCTGCG CATCGCCGCC ATTGCCTTCG AGTCAGAGCA GGGCATGGCC ATTACCGACC CGCAGGGTGT GATGCTGCGC GTCAACCGGG CCTTCAGCGC GATTACCGGC TACAGCGCGC CGGAGGCGGT CGGTCAAAAC CCGCGCCTGC TCAGCTCCGG ACGCCACGAC GCCGCCTTTT ATGCAGCCAT GTGGGACAGC CTGGTGCGTG AGGGTGCCTG GCAGGGCGAA ATCTGGAACC GGCGCAAAAA CGGCGAGGTG TTTCCTGAAT GGCTCACCAT CAGCGCGGTC AAAGACCCGG CCGGGCAAGC GACGCACTAT GTGGCCACAT TTACCGACCT CAGCACGCGC AAGTCGGCGG AGGATCAGAT CAAGAGTCTG GCTTTTTATG ACACCTTGAC CGGTTTGCCC AACCGCCGCC TGCTGCTGGA TCGGCTGAAA CAAGCGCTGG CCAGCGGTGC GCGGCACCGG CGCCAAGGCG CGCTGCTGTA CATTGACCTG GACGACTTCA AGACCCTCAA CAACACCTAC GGCCATGATG TGGGCGACCA GTTGCTGCAG GAGGTGGCGC AGCGTTTGAG CCACTATCTG CGCGCCGGCG ACACGGTGGC GCGTCCGGGC GGTGACTCCT TTGTGGTGCT GCTGGAGGCG CTGAGCACGA ACTCGGTGGA GGCCGCAACC GAGGCCGAAA ACACCGGTGA AAAAATCCGG CTCGCGCTCA GCCAGCCGTA TCAGATCGCC GATCATGCGC ATCGCAGCAC GGCCAGCATC GGCGTCACCC TGTTTGACGA CCGGCAGCAA GAAGGCATTG ATGAGCCCTT GAAGCGGGCT GAACTGGCCA TGTACCAGGC CAAGACGGCC GGGCGCAACA CATTGCGCTT CTTTGACCCG CAGATGCAGA CCGCCGTCAT GGCCATGGCG GCGCTGGAAG CCGATTTGCG CGAGGCGGTG CGCAGCAACC AGTTTCTTCT GTACTACCAG GCCCAGGTCA GCGGTGAGCG CCAGGTTGCC GGCGTGGAAG CGCTGGTGCG CTGGCAGCAT CCGGTGCGTG GTCTGGTGCC GCCGGCCGAG TTCATCCCGC TGGCCGAGCA GACCGGCCTG ATATTGCCCC TGGGCCAATG GGTGCTGGAA ACCGCCTGCG CCCAGTTGGC GGCCTGGGCC AGCCAGCCCG AACGCGCGCA TCTCACGGTC GCGGTCAATG TCAGCGCGTT GCAGTTTCAC CAGGCCGACT TTGTGGCGCA AGTGCTGGCG GCGCTCAAGC GCGCCGGCGC CAACCCGCAG CGCCTCAAGC TTGAGCTCAC GGAGAGCTTG CTGGTGCACG ATGCAGAAGA CGTCATCGCC AAGATGATCA CCTTGAAAGA ACAGGGCGTG GGCTTCTCGC TGGACGACTT TGGCACCGGG TATTCATCGC TGTCTTACCT CAAGCGGCTG CCGCTGAACC AACTCAAAAT CGACCAGGGC TTTGTGCGCG ACATCCTGCA CGACGCCAAC GACGCCGCCA TCGCCAAGAT GGTCGTCGCG CTGGCCGATA CCCTGGGCCT GTCAGTGATC GCCGAGGGGG TGGAAACCGA GGCCCAGCGC GACTTTCTGG CAGCCCAGGG TTGCCACGCT TATCAGGGCC ATTTGTACAG CCGCGCGCTG CCGATTGACG CCTTCGAGGC GTTCATGCGG CAGGTTTGA
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Protein sequence | MTGSEGNSGI PATVSARQSL KTKVTLITLL VFVLSLWSLS YYASRMLRQD MERLLGEQQF ATVSQVAAQL NQALQARVSA LETVARAISP ALLDKPQALQ VFLEQQIILK TLFNAGVHVL GPDGGVLGLV PEASRVGADY FQNPTVQAAL SEGKTSIGAP THEVLLKQPV FPVITLIRDA GGRVIGALAG VTNLDQPSFL DMISQSRYGK TGGYVLIAAQ QRRVLAATDK SRVMEVLPAP GGNPAIDRFL QGEEGSTVMR NPLGLEILAS DKSLPAAGWV LAAVLPTAEA FAPVRAMQQR MLLATSLLTL LAGLVVWWTI KRQLAPLLAT ARRLAAMADE KQALRALPVT HPDEIGQVVK GFNRLLGTLG QREALLQQIL DTSSVAIFLV DRQGRITKAN QRMATLFGYP LHELQGMEYV ALVHPAQRET GRKNMLALLD SALQSVDLER LYWRADQTEF WGHLTGQRFV DGNGEEQGLV GVIADITQRR QTEAELRIAA IAFESEQGMA ITDPQGVMLR VNRAFSAITG YSAPEAVGQN PRLLSSGRHD AAFYAAMWDS LVREGAWQGE IWNRRKNGEV FPEWLTISAV KDPAGQATHY VATFTDLSTR KSAEDQIKSL AFYDTLTGLP NRRLLLDRLK QALASGARHR RQGALLYIDL DDFKTLNNTY GHDVGDQLLQ EVAQRLSHYL RAGDTVARPG GDSFVVLLEA LSTNSVEAAT EAENTGEKIR LALSQPYQIA DHAHRSTASI GVTLFDDRQQ EGIDEPLKRA ELAMYQAKTA GRNTLRFFDP QMQTAVMAMA ALEADLREAV RSNQFLLYYQ AQVSGERQVA GVEALVRWQH PVRGLVPPAE FIPLAEQTGL ILPLGQWVLE TACAQLAAWA SQPERAHLTV AVNVSALQFH QADFVAQVLA ALKRAGANPQ RLKLELTESL LVHDAEDVIA KMITLKEQGV GFSLDDFGTG YSSLSYLKRL PLNQLKIDQG FVRDILHDAN DAAIAKMVVA LADTLGLSVI AEGVETEAQR DFLAAQGCHA YQGHLYSRAL PIDAFEAFMR QV
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