Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_4028 |
Symbol | |
ID | 3961707 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | + |
Start bp | 4490691 |
End bp | 4492034 |
Gene Length | 1344 bp |
Protein Length | 447 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637918852 |
Product | diguanylate cyclase |
Protein accession | YP_525257 |
Protein GI | 89902786 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGGATCA ACCTGCTCTT CAGCTTGCGC GGCAAGCTCA CTGCGATGCT GCTGCTTGCC AGCTTGACGG CGGCATTGGC GGTGGGCGGA ACGGCTTATT GGCTGTTGAT GCAAGACTTC AACGCAACGG CACGCGAGAC CGCCTTCACC AATTTCCAGA CTGATATTCA GGCGTATATC GGCACGTATG GTTCATGGGA AAACGCGCGT CGCAATCAGG TTTTTCACGA GTTTGTGATG CAGCGTCGAG GACCCTCCGG CAGCCTCAAC CCCCTGCCAG GTGCTGGCGG CAGGCCTGCC TTGCCGGGAG AAACAGACGC TGGTGAAACA CGTCGACAAG GCGCACCCGC GGGCGCTGTC CATCATCGTG ACCCGCCTTT TCATTTCATG CTGATTGATA CGCAAGGTCA TGTGCTGCTT GGGGGCGATG GTCGTCAAGA TACTGCGGTG GGCGAGGATC TTCGCCGTCA CGCGCGCCCG ATCAGTGTGA ACGGCAAGGT CGACGTGCTG GCCGTTCCTG TCGGATCGCC GCAACTGAGC ACACAGGACA AAGCTTACCT TGGCGCCATG CGCGAGGCGT TGCAGAATGG CTTGCTGGCG GCTTGCGCGC TGACCGTTGT CATGGGGCTT GTGTTCGGTT CGCGCTTCGG TGCGCGGGTG CGCGAATTGA CGTCCGCCAT TCAATCCATG CGGGCAGACG GCGAAATACT GCAACAAGTG CCGGTGCACA GCCGCGACGA GATGGGGCTG CTGGCATCGG CGTTCAATCG CATGAGCCGC GAGTTGTCCC AGGCGCATTC GGCGTTGCGC AGGACCAACG AGCAGGTGCA GTCGCAGGCT GCGCAGTTGA AAGAGCTTAG CGTGCGCGAT CCGCTCACGC AGATGTTCAA CCGGCGTTAC TTCGACGAGC AGTCTGCGCT GCTGTATCAA CAGGCGATGC GCCATGGCTG GTCGGTCAGT GTCATGGTGG GCGATCTGGA CTATTTCAAA TCGATCAACG ATGACTTTTC TCACGCCATT GGCGACGAGG TGTTGCGCCG CGTGGCCCTG ATCTTGCGCA AGAATACCCG CAGCACCGAT ATTGTTGCGC GTTACGGCGG CGAGGAGTTT GTGATCGCAT TTCCCGAAAG CACGGTGCAA CAAGCTGCCA TTCGTTGCGA AGCATTGCGG GCCGCCATCG AGCAACATAC ATGGCAAGAG GTGCACCCGG AATTGCGCGT GACGATGAGC ATGGGCTTGT GCGACGACAC CAAGCGCGGT TCGATCGAAA AGATGCTGGC CGCTGCGGAC GAGGGTCTGT ACGAAGCCAA ACGCAGCGGC CGCAACCGGG TGGTTAGCTG TTGA
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Protein sequence | MRINLLFSLR GKLTAMLLLA SLTAALAVGG TAYWLLMQDF NATARETAFT NFQTDIQAYI GTYGSWENAR RNQVFHEFVM QRRGPSGSLN PLPGAGGRPA LPGETDAGET RRQGAPAGAV HHRDPPFHFM LIDTQGHVLL GGDGRQDTAV GEDLRRHARP ISVNGKVDVL AVPVGSPQLS TQDKAYLGAM REALQNGLLA ACALTVVMGL VFGSRFGARV RELTSAIQSM RADGEILQQV PVHSRDEMGL LASAFNRMSR ELSQAHSALR RTNEQVQSQA AQLKELSVRD PLTQMFNRRY FDEQSALLYQ QAMRHGWSVS VMVGDLDYFK SINDDFSHAI GDEVLRRVAL ILRKNTRSTD IVARYGGEEF VIAFPESTVQ QAAIRCEALR AAIEQHTWQE VHPELRVTMS MGLCDDTKRG SIEKMLAAAD EGLYEAKRSG RNRVVSC
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