Gene Rfer_4028 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_4028 
Symbol 
ID3961707 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp4490691 
End bp4492034 
Gene Length1344 bp 
Protein Length447 aa 
Translation table11 
GC content60% 
IMG OID637918852 
Productdiguanylate cyclase 
Protein accessionYP_525257 
Protein GI89902786 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGGATCA ACCTGCTCTT CAGCTTGCGC GGCAAGCTCA CTGCGATGCT GCTGCTTGCC 
AGCTTGACGG CGGCATTGGC GGTGGGCGGA ACGGCTTATT GGCTGTTGAT GCAAGACTTC
AACGCAACGG CACGCGAGAC CGCCTTCACC AATTTCCAGA CTGATATTCA GGCGTATATC
GGCACGTATG GTTCATGGGA AAACGCGCGT CGCAATCAGG TTTTTCACGA GTTTGTGATG
CAGCGTCGAG GACCCTCCGG CAGCCTCAAC CCCCTGCCAG GTGCTGGCGG CAGGCCTGCC
TTGCCGGGAG AAACAGACGC TGGTGAAACA CGTCGACAAG GCGCACCCGC GGGCGCTGTC
CATCATCGTG ACCCGCCTTT TCATTTCATG CTGATTGATA CGCAAGGTCA TGTGCTGCTT
GGGGGCGATG GTCGTCAAGA TACTGCGGTG GGCGAGGATC TTCGCCGTCA CGCGCGCCCG
ATCAGTGTGA ACGGCAAGGT CGACGTGCTG GCCGTTCCTG TCGGATCGCC GCAACTGAGC
ACACAGGACA AAGCTTACCT TGGCGCCATG CGCGAGGCGT TGCAGAATGG CTTGCTGGCG
GCTTGCGCGC TGACCGTTGT CATGGGGCTT GTGTTCGGTT CGCGCTTCGG TGCGCGGGTG
CGCGAATTGA CGTCCGCCAT TCAATCCATG CGGGCAGACG GCGAAATACT GCAACAAGTG
CCGGTGCACA GCCGCGACGA GATGGGGCTG CTGGCATCGG CGTTCAATCG CATGAGCCGC
GAGTTGTCCC AGGCGCATTC GGCGTTGCGC AGGACCAACG AGCAGGTGCA GTCGCAGGCT
GCGCAGTTGA AAGAGCTTAG CGTGCGCGAT CCGCTCACGC AGATGTTCAA CCGGCGTTAC
TTCGACGAGC AGTCTGCGCT GCTGTATCAA CAGGCGATGC GCCATGGCTG GTCGGTCAGT
GTCATGGTGG GCGATCTGGA CTATTTCAAA TCGATCAACG ATGACTTTTC TCACGCCATT
GGCGACGAGG TGTTGCGCCG CGTGGCCCTG ATCTTGCGCA AGAATACCCG CAGCACCGAT
ATTGTTGCGC GTTACGGCGG CGAGGAGTTT GTGATCGCAT TTCCCGAAAG CACGGTGCAA
CAAGCTGCCA TTCGTTGCGA AGCATTGCGG GCCGCCATCG AGCAACATAC ATGGCAAGAG
GTGCACCCGG AATTGCGCGT GACGATGAGC ATGGGCTTGT GCGACGACAC CAAGCGCGGT
TCGATCGAAA AGATGCTGGC CGCTGCGGAC GAGGGTCTGT ACGAAGCCAA ACGCAGCGGC
CGCAACCGGG TGGTTAGCTG TTGA
 
Protein sequence
MRINLLFSLR GKLTAMLLLA SLTAALAVGG TAYWLLMQDF NATARETAFT NFQTDIQAYI 
GTYGSWENAR RNQVFHEFVM QRRGPSGSLN PLPGAGGRPA LPGETDAGET RRQGAPAGAV
HHRDPPFHFM LIDTQGHVLL GGDGRQDTAV GEDLRRHARP ISVNGKVDVL AVPVGSPQLS
TQDKAYLGAM REALQNGLLA ACALTVVMGL VFGSRFGARV RELTSAIQSM RADGEILQQV
PVHSRDEMGL LASAFNRMSR ELSQAHSALR RTNEQVQSQA AQLKELSVRD PLTQMFNRRY
FDEQSALLYQ QAMRHGWSVS VMVGDLDYFK SINDDFSHAI GDEVLRRVAL ILRKNTRSTD
IVARYGGEEF VIAFPESTVQ QAAIRCEALR AAIEQHTWQE VHPELRVTMS MGLCDDTKRG
SIEKMLAAAD EGLYEAKRSG RNRVVSC