| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_4027 |
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| Symbol | |
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| ID | 3961706 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 4489028 |
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| End bp | 4490338 |
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| Gene Length | 1311 bp |
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| Protein Length | 436 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637918851 |
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| Product | putative sigma factor |
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| Protein accession | YP_525256 |
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| Protein GI | 89902785 |
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| COG category | [K] Transcription |
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| COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGTGGCAA GCCTTACACA ACTGTCGCTG GAGGCGATCT GGCGGATTGA GGGGGCCAGC
ATCATCGCGG CGGTGGCCCG CATGGTGCGC GACATCGGCC TGGCCGAAGA ACTGGCGCAG
GACGCCCTGG TCGCGGCGCT GGAACACTGG CCCGCTGACG GTGTGCCGCA CAATCCGGCC
GCCTGGCTGA TGACGACCGC CAGGAACCGT GCACTGGACC ATTTGCGACG CGCCAGGATG
CTGCTGGAGA AGCACGATCA GATTGGCCAT GAGCTGGAGG CCCAGGAGGC TTTGATCGTG
CCCGATTTTG TGGATGCCCT GGATGCGGCC CGATCGGACC AGATCGGCGA CGACTTGCTG
CGCCTCATTT TCACGGCCTG TCACCCGGTG CTCTCGACCG AGGCGCGCGT CGCCTTGACC
CTCAAGCTGC TCGGCGGCCT GAGCACCGCC GAGATCGCAC GGGCCTGCCT GGTGCCGGAG
CCCACCGTCG CGCAACGCAT CGTGCGCGCC AAGCGCACGC TGACCGAGGC GCATGTGCCA
TTTGAACTGC CCCAGGGTGA CGCCCTGAGA CCGCGCCTGG GCTCGGTGCT GGAGGTGATT
TACCTGATTT TCAACGAGGG TTATACCGCC ACCAGCGGCG GCGAGTGGAT GCGCCCGGCC
CTTACCGACG AAGCCGTGCG CCTGGGGCGC GTGCTGGCCG CTCTGGCGCC CAGGGAAGCC
GAAGTGCACG GACTGGTGGC GCTGATGGAG CTGCAGGCCT CGCGCGCCGG TGCACGCGTT
GACGCATCGG GCCGGCCCAT ACTGCTGCCC GATCAGGACC GCAGCCGCTG GGACCGGCTG
CTCATTCGCC GCGGCCTCGC GGCACTGCAA CGCGCTGAAG CCTTGGGCGG AACGCTGGGG
CCTTATGCCT TGCAGGCGGC CATTGCGGCC TGCCACGCCC GCGCCAACAC GCACGCAGAG
ACCGACTGGC CGCGCATCGT CGCCCTTTAC GATGCACTGG CGCAGGTGAT GCCCTCACCC
ATCGTCGAAC TCAACCGTGC CGTCGCCGTC GGTATCGCTT TCGGCCCGGC AGCGGGGCTG
GAGATCGTGG ATTCGTTGTT GCGCCATCCC CAATTGGCAC GCTACCACTG GTTGCCCGGT
GTGAGGGCCG ATCTGCTCGC CAGGCTGGGC CGGCATGACG AAGCGCGGGC AGAGTTTGAA
CGGGCGGCGG GTCTGGCGCA GAACGCGCAG GAGCGCCAGC TGCTGCAGGA GCGTGCAATG
GCGCAGAGCC GACTTGAAAC CATCAAGCCG CGCGACCCAA CGGCCGGCTG A
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| Protein sequence | MVASLTQLSL EAIWRIEGAS IIAAVARMVR DIGLAEELAQ DALVAALEHW PADGVPHNPA
AWLMTTARNR ALDHLRRARM LLEKHDQIGH ELEAQEALIV PDFVDALDAA RSDQIGDDLL
RLIFTACHPV LSTEARVALT LKLLGGLSTA EIARACLVPE PTVAQRIVRA KRTLTEAHVP
FELPQGDALR PRLGSVLEVI YLIFNEGYTA TSGGEWMRPA LTDEAVRLGR VLAALAPREA
EVHGLVALME LQASRAGARV DASGRPILLP DQDRSRWDRL LIRRGLAALQ RAEALGGTLG
PYALQAAIAA CHARANTHAE TDWPRIVALY DALAQVMPSP IVELNRAVAV GIAFGPAAGL
EIVDSLLRHP QLARYHWLPG VRADLLARLG RHDEARAEFE RAAGLAQNAQ ERQLLQERAM
AQSRLETIKP RDPTAG
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