Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_4010 |
Symbol | |
ID | 3961689 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | + |
Start bp | 4473039 |
End bp | 4476242 |
Gene Length | 3204 bp |
Protein Length | 1067 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637918834 |
Product | HsdR family type I site-specific deoxyribonuclease |
Protein accession | YP_525239 |
Protein GI | 89902768 |
COG category | [V] Defense mechanisms |
COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTCACCG AATCCGCCAT CGAAACCTTT GCCATCAAGC TGTTTGAACG GCTAGGTTAC GTCTACCTGC ATGGCCCTGA CATCGCCCCT GACAGTGATG GCCCAGAGCG CAGCAGCTAC GCCGAGGTGC TGTTGCCCGG TCGGCTAGCC CAGGCCGCCG GGCGCATCAA CCACAAGCTG CCCCGGGATG TGGTTGAAAT GGCGCTCAAG GAGGTGCAAC GGGCCCACTC GCCAGACTTG CTGGCCAGCA ATGAGGCTTT CCATCGCCTG TTGACGGAAG GGGTGCCGGT CAGCATGCAA AAGGATGGTG ACACACGCGG CGAACGGGTG TGGCTGATTG ACTTCGCCCG GCCTGAGAAC AACGAGTTCG TGGTGGCAAA CCAATTCACC GTCATCGAAA ACCATCAAAA GAAACGGCCC GACCTGGTGC TGTTTGTCAA TGGCATTCCG CTGGTGGTGA TCGAACTCAA GAACGCAGCC GATGAAAACG CCACGCTTAA GTCGGCGTAT CAGCAGATTG AGACCTACAA ACAAGCCATA CCGAGTCTGT TCACTGCCAA CGCTTTGGTC GTCATCTCTG ACGGCCTGGA GGCCAAGGCT GGCTCCATCT CAGCAAGTTT GTCGCGCTTT ATGGCATGGA AGAGCGCTGA TGGCAAAGCA GAAGCGTCTC ATCTGGTCAG CCAGTTGGAA GCGCTGATCC TCGGCATGTT GAACCAGGGA ACGTTGCTGG ACTTGGTGCG CCACTTCATC GTTTTCGAGA AGGGCAGCAA GGAAGATCCG AACACAGGTC AGATCACGAT CAGCACCATC AAGAAGCTGG CGGCCTATCA CCAGTATTAC GCGGTGAACG CGGCGGTAGC CTCCACCTTG CGGGCGGCGG ACATGGGCGG GCCGCTGTCC GTGCGCGAGA ATCCGGCCAG TTATGGCCTG CCCGGTATTG CAGATCAGCC TAAGAGTGAC ATGAAGGCGG GTGTGGTGTG GCACACCCAG GGGTCGGGCA AGTCGCTCTC CATGGTTTTC TATACCGGCA AGATTGTTCT AACGCTGGAC AACCCGACGG TGCTGGTGAT CACCGACCGC AATGATCTGG ACGACCAGCT TTTTAATACC TTTGCCGCTT CCAAACAGTT GTTACGCCAG GAGCCAGTGC AGGCGAAGGA TCGCGAGCAC TTAAAGGCAC TGCTGAAGGT GGCAGCGGGC GGCGTTGTTT TCTCAACCAT TCAGAAGTTC CAGCCCGATG AGGGCAATGT TTACGACCAG CTCTCCAATC GTCCCAACAT CGTGGTGATC GTCGACGAAG CCCACCGCAC CCAGTACGGC TTTGCCGCCA AGACGGTAGA CGAGAAAAAT GCAGATGGCA TGGTGATCGG CAAGAAGGTG GTCTATGGCT TTGCCAAGTA TCTGCGCGAT GCTTTGCCCC GCGCCACCTA TCTGGGTTTC ACCGGTACAC CCATTGAGAA AACTGATGTG AACACCCCGG CGGTGTTTGG CAACTATGTG GACATCTATG ACATTGCCCA AGCAGTGGAG GATGGTGCCA CGGTGCGTAT TTATTACGAG AGCCGCCTGG CCAAAGTAAG TCTGAGCGAG GAAGGCAAGA AACTGATTGC CGAATTGGAC GAAGAGCTGG AGCAAGACGA GCTGACCGAG ACACAAAAAC CCAAAGCCAA GTGGACCAAG ATGGAGGCGC TGATTGGCAG TGAGCAGCGA GTTAAGAACA TTGCCCGCGA CATCGTCGGT CACTTTGAGG CGAGACAGGA GGTATTCGCT GGCAAGGGAA TGGTGGTGAG CATGTCGCGG CGCATTGCTG CCGATCTGTA TGACGAAATC ATCAAACTGC GGCCCGACTG GCACGCCGAC GAACTGAGCA AAGGCGTTAT CAAGGTGGTG ATGACTGCTG CATCAAGCGA TGGGCCGAAG CTCGCCAAGC ACCACACTAC CAAGGAGCAG CGGAAGCTGC TGGCCGAGCG CATGAAGGCT GAAGATGATC CGCTCAAGTT GGTGATCGTG CGCGACATGT GGCTGACCGG CTTCGATGCG CCGAGCATGC ACACCCTCTA CATCGACAAG CCCATGAAGG GGCACAACCT GATGCAGGCT ATTGCGCGGG TGAACCGTGT GTACAAAGAC AAGCCTGGCG GCTTGGTGGT CGATTACCTG GGAATCGCGG CGGACCTCAA AGAGGCGCTT TCGTTCTATT CCGATGCTGG CGGCAAGGGT GACCCAACCC TGTTGCAGGA GCAGGCCGTG GGCCTGATGC TGGAGAAACT TGAGGTGATC TCGGCCCTGT ATCACGGCTT TGCCTATGAA CACTATTTCG GAGCGAATAC CGCCCAGAAG CTGTCGCTGA TTCTCGCGGC GGAAGAGCAT ATCCTCGGCT TGGATGACGG CCGCAAGCGT TATATCAACG AGGTCACGGC GCTTTCGCAA GCCTTCGCCA TTGCCATACC GCATGAACAA GCGATGGACG TGAAAGACGA GGTGGGCTTC TTCCAGGCCG TGAAGGCGCG GCTGGTGAAG TACGACAGTG TCGAAGGCGA GCGCAGCAAC GAAGAAATTG AAACCACCAT TCGCCAGGTG ATTGACCAAG CGTTGGTGTC GGAAAAAGTG ATTGATGTGT TTGACGCGGC GGGCATCAAA AAAACAGATA TCTCCATACT GTCGGATGAA TTCTTGGCCG AACTGAAAGG CTACGAGCAT AAAAACGTGG CCTTGGAGGT GCTCAAGAAA CTCCTCAATG ACGAATTGAA AATCCGCGCC AAGCGCAACC TGGTGCAAAG CCGGTCACTG ATGGAGATGT TAGAGGCCTC CATCAAGAAA TACCACAACA AGATTCTGAC TGCGGCCGAG GTGATGGACG AGCTGATCAA GGTCAGCAAA GAGATCGTCG CCGCCGATGA TGAAGCCAGA CACATGGGGC TTTCCGACTT TGAATATGCT TTTTACACTG CAGTGGCCAA TAACGACAGT GCCCGTGAAC TGATGCAACA AGACAAGTTA CGCGAACTAG CCGTGGTGTT AACCCAGCGC GTGCGCGAAA ACGCATCCAT AGACTGGACT ATCAAAGAGA ACGTGAGAGC TAAGCTCAAG GTGATTGTGA AACGCACTCT GCGGCAATTT GGTTATCCAC CAAACATGGA GTTGCTCGCG ACTGAAACAG TGCTGAAGCA GGCGGAGATG ATTGCGAACG AGCTTACGCA GTAG
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Protein sequence | MLTESAIETF AIKLFERLGY VYLHGPDIAP DSDGPERSSY AEVLLPGRLA QAAGRINHKL PRDVVEMALK EVQRAHSPDL LASNEAFHRL LTEGVPVSMQ KDGDTRGERV WLIDFARPEN NEFVVANQFT VIENHQKKRP DLVLFVNGIP LVVIELKNAA DENATLKSAY QQIETYKQAI PSLFTANALV VISDGLEAKA GSISASLSRF MAWKSADGKA EASHLVSQLE ALILGMLNQG TLLDLVRHFI VFEKGSKEDP NTGQITISTI KKLAAYHQYY AVNAAVASTL RAADMGGPLS VRENPASYGL PGIADQPKSD MKAGVVWHTQ GSGKSLSMVF YTGKIVLTLD NPTVLVITDR NDLDDQLFNT FAASKQLLRQ EPVQAKDREH LKALLKVAAG GVVFSTIQKF QPDEGNVYDQ LSNRPNIVVI VDEAHRTQYG FAAKTVDEKN ADGMVIGKKV VYGFAKYLRD ALPRATYLGF TGTPIEKTDV NTPAVFGNYV DIYDIAQAVE DGATVRIYYE SRLAKVSLSE EGKKLIAELD EELEQDELTE TQKPKAKWTK MEALIGSEQR VKNIARDIVG HFEARQEVFA GKGMVVSMSR RIAADLYDEI IKLRPDWHAD ELSKGVIKVV MTAASSDGPK LAKHHTTKEQ RKLLAERMKA EDDPLKLVIV RDMWLTGFDA PSMHTLYIDK PMKGHNLMQA IARVNRVYKD KPGGLVVDYL GIAADLKEAL SFYSDAGGKG DPTLLQEQAV GLMLEKLEVI SALYHGFAYE HYFGANTAQK LSLILAAEEH ILGLDDGRKR YINEVTALSQ AFAIAIPHEQ AMDVKDEVGF FQAVKARLVK YDSVEGERSN EEIETTIRQV IDQALVSEKV IDVFDAAGIK KTDISILSDE FLAELKGYEH KNVALEVLKK LLNDELKIRA KRNLVQSRSL MEMLEASIKK YHNKILTAAE VMDELIKVSK EIVAADDEAR HMGLSDFEYA FYTAVANNDS ARELMQQDKL RELAVVLTQR VRENASIDWT IKENVRAKLK VIVKRTLRQF GYPPNMELLA TETVLKQAEM IANELTQ
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