Gene Rfer_4010 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_4010 
Symbol 
ID3961689 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp4473039 
End bp4476242 
Gene Length3204 bp 
Protein Length1067 aa 
Translation table11 
GC content56% 
IMG OID637918834 
ProductHsdR family type I site-specific deoxyribonuclease 
Protein accessionYP_525239 
Protein GI89902768 
COG category[V] Defense mechanisms 
COG ID[COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 
TIGRFAM ID[TIGR00348] type I site-specific deoxyribonuclease, HsdR family 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTCACCG AATCCGCCAT CGAAACCTTT GCCATCAAGC TGTTTGAACG GCTAGGTTAC 
GTCTACCTGC ATGGCCCTGA CATCGCCCCT GACAGTGATG GCCCAGAGCG CAGCAGCTAC
GCCGAGGTGC TGTTGCCCGG TCGGCTAGCC CAGGCCGCCG GGCGCATCAA CCACAAGCTG
CCCCGGGATG TGGTTGAAAT GGCGCTCAAG GAGGTGCAAC GGGCCCACTC GCCAGACTTG
CTGGCCAGCA ATGAGGCTTT CCATCGCCTG TTGACGGAAG GGGTGCCGGT CAGCATGCAA
AAGGATGGTG ACACACGCGG CGAACGGGTG TGGCTGATTG ACTTCGCCCG GCCTGAGAAC
AACGAGTTCG TGGTGGCAAA CCAATTCACC GTCATCGAAA ACCATCAAAA GAAACGGCCC
GACCTGGTGC TGTTTGTCAA TGGCATTCCG CTGGTGGTGA TCGAACTCAA GAACGCAGCC
GATGAAAACG CCACGCTTAA GTCGGCGTAT CAGCAGATTG AGACCTACAA ACAAGCCATA
CCGAGTCTGT TCACTGCCAA CGCTTTGGTC GTCATCTCTG ACGGCCTGGA GGCCAAGGCT
GGCTCCATCT CAGCAAGTTT GTCGCGCTTT ATGGCATGGA AGAGCGCTGA TGGCAAAGCA
GAAGCGTCTC ATCTGGTCAG CCAGTTGGAA GCGCTGATCC TCGGCATGTT GAACCAGGGA
ACGTTGCTGG ACTTGGTGCG CCACTTCATC GTTTTCGAGA AGGGCAGCAA GGAAGATCCG
AACACAGGTC AGATCACGAT CAGCACCATC AAGAAGCTGG CGGCCTATCA CCAGTATTAC
GCGGTGAACG CGGCGGTAGC CTCCACCTTG CGGGCGGCGG ACATGGGCGG GCCGCTGTCC
GTGCGCGAGA ATCCGGCCAG TTATGGCCTG CCCGGTATTG CAGATCAGCC TAAGAGTGAC
ATGAAGGCGG GTGTGGTGTG GCACACCCAG GGGTCGGGCA AGTCGCTCTC CATGGTTTTC
TATACCGGCA AGATTGTTCT AACGCTGGAC AACCCGACGG TGCTGGTGAT CACCGACCGC
AATGATCTGG ACGACCAGCT TTTTAATACC TTTGCCGCTT CCAAACAGTT GTTACGCCAG
GAGCCAGTGC AGGCGAAGGA TCGCGAGCAC TTAAAGGCAC TGCTGAAGGT GGCAGCGGGC
GGCGTTGTTT TCTCAACCAT TCAGAAGTTC CAGCCCGATG AGGGCAATGT TTACGACCAG
CTCTCCAATC GTCCCAACAT CGTGGTGATC GTCGACGAAG CCCACCGCAC CCAGTACGGC
TTTGCCGCCA AGACGGTAGA CGAGAAAAAT GCAGATGGCA TGGTGATCGG CAAGAAGGTG
GTCTATGGCT TTGCCAAGTA TCTGCGCGAT GCTTTGCCCC GCGCCACCTA TCTGGGTTTC
ACCGGTACAC CCATTGAGAA AACTGATGTG AACACCCCGG CGGTGTTTGG CAACTATGTG
GACATCTATG ACATTGCCCA AGCAGTGGAG GATGGTGCCA CGGTGCGTAT TTATTACGAG
AGCCGCCTGG CCAAAGTAAG TCTGAGCGAG GAAGGCAAGA AACTGATTGC CGAATTGGAC
GAAGAGCTGG AGCAAGACGA GCTGACCGAG ACACAAAAAC CCAAAGCCAA GTGGACCAAG
ATGGAGGCGC TGATTGGCAG TGAGCAGCGA GTTAAGAACA TTGCCCGCGA CATCGTCGGT
CACTTTGAGG CGAGACAGGA GGTATTCGCT GGCAAGGGAA TGGTGGTGAG CATGTCGCGG
CGCATTGCTG CCGATCTGTA TGACGAAATC ATCAAACTGC GGCCCGACTG GCACGCCGAC
GAACTGAGCA AAGGCGTTAT CAAGGTGGTG ATGACTGCTG CATCAAGCGA TGGGCCGAAG
CTCGCCAAGC ACCACACTAC CAAGGAGCAG CGGAAGCTGC TGGCCGAGCG CATGAAGGCT
GAAGATGATC CGCTCAAGTT GGTGATCGTG CGCGACATGT GGCTGACCGG CTTCGATGCG
CCGAGCATGC ACACCCTCTA CATCGACAAG CCCATGAAGG GGCACAACCT GATGCAGGCT
ATTGCGCGGG TGAACCGTGT GTACAAAGAC AAGCCTGGCG GCTTGGTGGT CGATTACCTG
GGAATCGCGG CGGACCTCAA AGAGGCGCTT TCGTTCTATT CCGATGCTGG CGGCAAGGGT
GACCCAACCC TGTTGCAGGA GCAGGCCGTG GGCCTGATGC TGGAGAAACT TGAGGTGATC
TCGGCCCTGT ATCACGGCTT TGCCTATGAA CACTATTTCG GAGCGAATAC CGCCCAGAAG
CTGTCGCTGA TTCTCGCGGC GGAAGAGCAT ATCCTCGGCT TGGATGACGG CCGCAAGCGT
TATATCAACG AGGTCACGGC GCTTTCGCAA GCCTTCGCCA TTGCCATACC GCATGAACAA
GCGATGGACG TGAAAGACGA GGTGGGCTTC TTCCAGGCCG TGAAGGCGCG GCTGGTGAAG
TACGACAGTG TCGAAGGCGA GCGCAGCAAC GAAGAAATTG AAACCACCAT TCGCCAGGTG
ATTGACCAAG CGTTGGTGTC GGAAAAAGTG ATTGATGTGT TTGACGCGGC GGGCATCAAA
AAAACAGATA TCTCCATACT GTCGGATGAA TTCTTGGCCG AACTGAAAGG CTACGAGCAT
AAAAACGTGG CCTTGGAGGT GCTCAAGAAA CTCCTCAATG ACGAATTGAA AATCCGCGCC
AAGCGCAACC TGGTGCAAAG CCGGTCACTG ATGGAGATGT TAGAGGCCTC CATCAAGAAA
TACCACAACA AGATTCTGAC TGCGGCCGAG GTGATGGACG AGCTGATCAA GGTCAGCAAA
GAGATCGTCG CCGCCGATGA TGAAGCCAGA CACATGGGGC TTTCCGACTT TGAATATGCT
TTTTACACTG CAGTGGCCAA TAACGACAGT GCCCGTGAAC TGATGCAACA AGACAAGTTA
CGCGAACTAG CCGTGGTGTT AACCCAGCGC GTGCGCGAAA ACGCATCCAT AGACTGGACT
ATCAAAGAGA ACGTGAGAGC TAAGCTCAAG GTGATTGTGA AACGCACTCT GCGGCAATTT
GGTTATCCAC CAAACATGGA GTTGCTCGCG ACTGAAACAG TGCTGAAGCA GGCGGAGATG
ATTGCGAACG AGCTTACGCA GTAG
 
Protein sequence
MLTESAIETF AIKLFERLGY VYLHGPDIAP DSDGPERSSY AEVLLPGRLA QAAGRINHKL 
PRDVVEMALK EVQRAHSPDL LASNEAFHRL LTEGVPVSMQ KDGDTRGERV WLIDFARPEN
NEFVVANQFT VIENHQKKRP DLVLFVNGIP LVVIELKNAA DENATLKSAY QQIETYKQAI
PSLFTANALV VISDGLEAKA GSISASLSRF MAWKSADGKA EASHLVSQLE ALILGMLNQG
TLLDLVRHFI VFEKGSKEDP NTGQITISTI KKLAAYHQYY AVNAAVASTL RAADMGGPLS
VRENPASYGL PGIADQPKSD MKAGVVWHTQ GSGKSLSMVF YTGKIVLTLD NPTVLVITDR
NDLDDQLFNT FAASKQLLRQ EPVQAKDREH LKALLKVAAG GVVFSTIQKF QPDEGNVYDQ
LSNRPNIVVI VDEAHRTQYG FAAKTVDEKN ADGMVIGKKV VYGFAKYLRD ALPRATYLGF
TGTPIEKTDV NTPAVFGNYV DIYDIAQAVE DGATVRIYYE SRLAKVSLSE EGKKLIAELD
EELEQDELTE TQKPKAKWTK MEALIGSEQR VKNIARDIVG HFEARQEVFA GKGMVVSMSR
RIAADLYDEI IKLRPDWHAD ELSKGVIKVV MTAASSDGPK LAKHHTTKEQ RKLLAERMKA
EDDPLKLVIV RDMWLTGFDA PSMHTLYIDK PMKGHNLMQA IARVNRVYKD KPGGLVVDYL
GIAADLKEAL SFYSDAGGKG DPTLLQEQAV GLMLEKLEVI SALYHGFAYE HYFGANTAQK
LSLILAAEEH ILGLDDGRKR YINEVTALSQ AFAIAIPHEQ AMDVKDEVGF FQAVKARLVK
YDSVEGERSN EEIETTIRQV IDQALVSEKV IDVFDAAGIK KTDISILSDE FLAELKGYEH
KNVALEVLKK LLNDELKIRA KRNLVQSRSL MEMLEASIKK YHNKILTAAE VMDELIKVSK
EIVAADDEAR HMGLSDFEYA FYTAVANNDS ARELMQQDKL RELAVVLTQR VRENASIDWT
IKENVRAKLK VIVKRTLRQF GYPPNMELLA TETVLKQAEM IANELTQ