| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3984 |
|---|
| Symbol | |
|---|
| ID | 3961644 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 4447723 |
|---|
| End bp | 4448916 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637918808 |
|---|
| Product | 3-oxoacyl-(acyl carrier protein) synthase I |
|---|
| Protein accession | YP_525213 |
|---|
| Protein GI | 89902742 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0304] 3-oxoacyl-(acyl-carrier-protein) synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCAGCCAC TCTTAATAAA TACATTCACA ACCACCACCG CGTTGGGGCG TGGCCTTACC
GACACATTGA GTGCACTGCG CGCGCAACGC AGCGGCTTGC AGGCACGTTC CTGGGAGACG
GTGGACCTGC CCACTTGCCT GGGCGAGGTT GATGGCCTGG ATGCCATCAA CCTACGCGCC
GACATGCAAG CATTCGACTG CCGCAACAAC CGCCTGGCCC AGCTCGCTCT GGAACAGGAC
GGTTTCATGC AGAGTGTGCA AACCGCAGCA GAACACTATG GCCGACAACG CATCGGCGTA
TTTCTGGGCA GCAGCACATC GGGCATCCTG AGTTCAGAGC AAGCTTATCG CCAGCGTGAC
CCGGTCAGCG GTGCCCTGCC TGCCAGTCAC AGTTACCGGC ATACCCACAA CATGTTCTCC
GTGGCGGATT TCGTGCGCCA TTACGCCGAT CTGCAAGGGC CTGCGTGTGT GGTCTCTACC
GCCTGCTCAT CCAGCGCCAA AGTATTTGGC ATCGCCCAGC GCATGATCGG CTGCGGCCTG
ATTGATGCTG CCGTGGTGGG GGGTGTCGAC TCCCTGTGCC TGACCACTGT CTACGGCTTC
AATTCACTGC AATTGATATC CAACCGCCCC TGCATGCCCT TTGATGCCCA GCGCGACGGC
ATTTCGATTG GTGAGGGCGC GGCCTTCATC TTGCTTGAAC GTGCCGATCA GGCCCAGACA
GATGACCTCC TGCTCAGTGG TGTCGGCGAG TCCAGCGATG CGCACCACAT GTCATCGCCC
CACCCCGAGG GACGGGGTGC GCGCCTGGCC ATGCAAGCTG CCCTGGACAT GGCAGGGCTG
CAGCCGCAGA CCATTGGCTA TATCAACCTG CACGGCACGG CCACTCCCAG CAACGACGCG
GTCGAAGATC TAGGGGTGAC CGCAGTGTTC GGCACAAACA CCCCCTGCAG CTCTACCAAG
GGTCACACCG GCCACACCTT GGGAGCCGCC GGCAGTGTGG AAGCCGTGAT CTGCGCGTTG
GCGCTACGCC ATGATTTTTT ACCCGGCGGT GTCGGCACCC GCACCCCCGA TCCACGCCTG
CATTGCAATT ACCTTTTGAC AAACCAGGAG CAGGCCATTA CCCACGCACT GAGCAACTCC
TTTGGTTTTG GCGGCAGCAA TTGCAGTTTG CTGTTCTCCC GGAAAAGGGC ATGA
|
|---|
| Protein sequence | MQPLLINTFT TTTALGRGLT DTLSALRAQR SGLQARSWET VDLPTCLGEV DGLDAINLRA
DMQAFDCRNN RLAQLALEQD GFMQSVQTAA EHYGRQRIGV FLGSSTSGIL SSEQAYRQRD
PVSGALPASH SYRHTHNMFS VADFVRHYAD LQGPACVVST ACSSSAKVFG IAQRMIGCGL
IDAAVVGGVD SLCLTTVYGF NSLQLISNRP CMPFDAQRDG ISIGEGAAFI LLERADQAQT
DDLLLSGVGE SSDAHHMSSP HPEGRGARLA MQAALDMAGL QPQTIGYINL HGTATPSNDA
VEDLGVTAVF GTNTPCSSTK GHTGHTLGAA GSVEAVICAL ALRHDFLPGG VGTRTPDPRL
HCNYLLTNQE QAITHALSNS FGFGGSNCSL LFSRKRA
|
|---|
| |