Gene Rfer_3955 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_3955 
Symbol 
ID3961595 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp4421281 
End bp4424289 
Gene Length3009 bp 
Protein Length1002 aa 
Translation table11 
GC content62% 
IMG OID637918780 
ProductDNA topoisomerase III 
Protein accessionYP_525185 
Protein GI162289250 
COG category[B] Chromatin structure and dynamics
[L] Replication, recombination and repair 
COG ID[COG0550] Topoisomerase IA
[COG5531] SWIB-domain-containing proteins implicated in chromatin remodeling 
TIGRFAM ID[TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.236337 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAACAT TGATCATTGC CGAAAAACCG TCAGTCGCCC AAGACATCGT GCGCGCCCTC 
ACGCCGGTGG CGGGCAAGTT CGACAAGCAC GACGAGCATT TTGAAAGCGA CAGCTACGTC
GTCACCAGTG CGGTAGGCCA CTTGCTGGAG ATTCAGGCGC CGGAAGAATT TGACGTCAAG
CGCGGCAAGT GGAGCTTTGC CCACCTGCCC GTGATTCCGC CGCACTTTGA TCTCAAGCCG
GTGGACAAAA CCAAAACGCG CCTGAACGCC GTGGTCAAAC TGGCCAAGCG CAAGGATGTG
GACCAACTCA TCAACGCCTG TGATGCCGGG CGCGAGGGCG AGCTGATCTT TCGCCTGATC
GAGCAATATG CGGGCGGGGC CAAGCCGCTG GGCAAGCCGG TGCGCCGCTT GTGGCTGCAG
TCCATGACGC CGCAAGCCAT TCGCGACGGT TTCAACACCC TGCGCTCCAA CGAACAAATG
TTGCCGCTGG CCGACGCGGC GCGCTGCCGC TCGGAGGCCG ACTGGCTGGT CGGCATCAAC
GGCACGCGCG CCATGACGGC GTTCAACTCG CGCGACGGCG GCTTCTTTCT GACCACCGTG
GGCCGGGTAC AAACACCGAC CTTGAGCGTG GTGGTGGAGC GCGAGGAAAA AATCCGCGCC
TTTGTGTCGC GCGACTATTG GGAGGTGCAC GCCACCTTCG CCGCGCAGGC GGGCGACTAC
CCGGCCAAAT GGTTTGACCC GCAGTGGAAA AAAGCCGCCG CCAATGCCGC CGCCGGTAAC
CTTGAGGAGG CCGACCCGGA GCTCAAGGCC GACCGCCTGT GGCAGCAGCG CGAAGCGCAA
GCGATTGCCG ATGCCGTGCG TGGCCAAACC GCCAGCGTCA CCGAAGAGAG CAAGCCGACC
ACGCAGGCTT CTCCCTTGCT GTTTGACTTG ACTTCCCTGC AGCGTGAGGC CAACGGCAAG
TTCGGCTTTT CCGCCAAAAC CACGCTGTCG ATCGCGCAAA GCCTGTACGA GCGTCACAAA
GCCCTGACCT ACCCGCGCAC CGACTCGCGC GCGCTGCCCG AGGACTACCT GCCGGTGGTC
AAGCAAACGT TCGAGATGCT CTCAAAAAGC GCCATGCGCC ATCTGGCACC ACACGCATTG
ACGGCGCTGA ACAACAACTA CATTCGCCCC AGCAAACGAA TCTTTGACAA CAGCAAGGTG
AGTGACCACT TTGCCATCAT CCCGACCCTG CAGGCGCCCA GCGGCTTGAG CGAAGCCGAG
CAGAAGATTT ATGACCTGGT GGTGCGCCGC TTCATGGCGG TGTTTTTCCC GAACGCTGAA
TACCAGATCA CGACCCGAAT TTCCGTGGCC GCCGGCCACA GCTTCAAGAC CGAAGGCAAG
GTGCTGGTCA AGCCCGGCTG GCTGGCCATT TACGGCAAAG AGGCCGTCGA TGAAGTGACG
GATCGTGACG GCGCCAAAGA CGGCGACAAG GGCCAGCGCC TGGTGCCGGT GCAAGCCGGT
GAACGCGTCA CGGCGCAGAC GGTCGAGGCC CGTGGCCTGA AAACCCGACC CCCCGCACGC
TACACCGAAG CCACGCTGCT GGGCGCCATG GAAGGCGCCG GGAAAACCAT TGAAGACGAT
GAGCTGCGCG CCGCCATGCA CGAAAAAGGC CTGGGCACAC CGGCCACCCG CGCCAGCATC
ATTGAAGGCC TGCTGACGCA GAAATACATG CTGCGCGAAG GCCGCGAGCT GATCCCCACC
GCATCGGCGT TTCAGCTCAT GACGCTCTTA CGCGGCCTGG ATGTCAAGGA GTTGTCCAAA
GCCGAATTGA CCGGCGAGTG GGAACACAAG CTGGCACTGA TGGAGCACGG TCAGCTCAGC
CGGGCTGAGT TCATGGCCGA GATTGCCGCC ATGACCGAGC GCATGGTGAA GCAGGCCAAG
GAATACGACC GCGACACCGT CCCCGGCAAC TACGCCACTT TGACAGCACC GTGCCCGAAC
TGCGGCGGCA TCATCAAGGA AAACTACCGC CGCTACACCT GCACCGGCAA GACCGGCGCG
GAGGAAGGCT GCGGCTTCTC CTTTGGCAAG ACCCCGGCCG GGCGAACCTT TGAAGTGGCC
GAAGTGGAGC AGTTTCTGCG CGACAAAAAG ATTGGCCCGC TGGAGGGTTT CCGCTCCAAG
GCGGGCTGGC CGTTCACGGC TGAGATGGTG ATCAAGTTCG ACGAGGAAAG CAAAAACTAC
AAGCTCGAAT TTGACTTTGG CGACGACAAG AAGGGCGAGG AAAGCGGTGA ACTGATCGAC
TTCAGTGGCC AGGAGTCACT GGGCGCCTGT CCCAAATGCG GTGCTCCCGT GTTTGAGCAT
GGCAAGAACT ACGTCTGCGA AAAGTCCGTG CCCACCGACG CCCAGGCCAC GCCCAGCTGC
GACTTCAAGA CCGGCCAGAT CATCCTGCAG CAGCCGATTG AGCGCGAGCA GATCGCCAAG
TTACTGGCCA CCGGCAAGAC CGATTTGCTC GACAAGTTTG TCTCCATGCG CACCCGGCGC
GGCTTCAAAG CCATGCTGGC CTGGGACGCC GAGGCCGGCA AAGTGAATTT TGAGTTTGCA
CCAAGCAAAT TCCCGCCGCG CAAAACCGCC GCCAAGTCGG CAGCCGGGGC CTCGGTAGCT
GCAAAAACAG GAGCAGCTCG AGCAGCAACA ACGGGGGCTG CAGCCAAGAA AGCCGCTAAA
AAAGTGGCCA GCCCCAAAGC CGCGGCCAAG GCCAGCGCCA AAACGCCGCG CAAGGCAGCG
GTCAAAAAAG TCGCCAGCCC AGCCGCCGGC CTGCAGCCCA GCGCGGCATT GGCCGCCGTG
ATTGGCGCGG AACCGGTGGC GCGGCCGCAG GTGATCAAGA AGCTGTGGGA CTACATCAAG
GCCAACAATC TGCAGGACGC CGTCAACAAG CGCAACATCA ATGCCGACGC CAAACTGCTG
GCCGTGTTCG GCAAGCCGCA GGTGACGATG TTCGAGCTGG CCGGCATTGT CGGAAAACAC
CTGGCGTGA
 
Protein sequence
MKTLIIAEKP SVAQDIVRAL TPVAGKFDKH DEHFESDSYV VTSAVGHLLE IQAPEEFDVK 
RGKWSFAHLP VIPPHFDLKP VDKTKTRLNA VVKLAKRKDV DQLINACDAG REGELIFRLI
EQYAGGAKPL GKPVRRLWLQ SMTPQAIRDG FNTLRSNEQM LPLADAARCR SEADWLVGIN
GTRAMTAFNS RDGGFFLTTV GRVQTPTLSV VVEREEKIRA FVSRDYWEVH ATFAAQAGDY
PAKWFDPQWK KAAANAAAGN LEEADPELKA DRLWQQREAQ AIADAVRGQT ASVTEESKPT
TQASPLLFDL TSLQREANGK FGFSAKTTLS IAQSLYERHK ALTYPRTDSR ALPEDYLPVV
KQTFEMLSKS AMRHLAPHAL TALNNNYIRP SKRIFDNSKV SDHFAIIPTL QAPSGLSEAE
QKIYDLVVRR FMAVFFPNAE YQITTRISVA AGHSFKTEGK VLVKPGWLAI YGKEAVDEVT
DRDGAKDGDK GQRLVPVQAG ERVTAQTVEA RGLKTRPPAR YTEATLLGAM EGAGKTIEDD
ELRAAMHEKG LGTPATRASI IEGLLTQKYM LREGRELIPT ASAFQLMTLL RGLDVKELSK
AELTGEWEHK LALMEHGQLS RAEFMAEIAA MTERMVKQAK EYDRDTVPGN YATLTAPCPN
CGGIIKENYR RYTCTGKTGA EEGCGFSFGK TPAGRTFEVA EVEQFLRDKK IGPLEGFRSK
AGWPFTAEMV IKFDEESKNY KLEFDFGDDK KGEESGELID FSGQESLGAC PKCGAPVFEH
GKNYVCEKSV PTDAQATPSC DFKTGQIILQ QPIEREQIAK LLATGKTDLL DKFVSMRTRR
GFKAMLAWDA EAGKVNFEFA PSKFPPRKTA AKSAAGASVA AKTGAARAAT TGAAAKKAAK
KVASPKAAAK ASAKTPRKAA VKKVASPAAG LQPSAALAAV IGAEPVARPQ VIKKLWDYIK
ANNLQDAVNK RNINADAKLL AVFGKPQVTM FELAGIVGKH LA