Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_3955 |
Symbol | |
ID | 3961595 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | + |
Start bp | 4421281 |
End bp | 4424289 |
Gene Length | 3009 bp |
Protein Length | 1002 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637918780 |
Product | DNA topoisomerase III |
Protein accession | YP_525185 |
Protein GI | 162289250 |
COG category | [B] Chromatin structure and dynamics [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA [COG5531] SWIB-domain-containing proteins implicated in chromatin remodeling |
TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.236337 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAACAT TGATCATTGC CGAAAAACCG TCAGTCGCCC AAGACATCGT GCGCGCCCTC ACGCCGGTGG CGGGCAAGTT CGACAAGCAC GACGAGCATT TTGAAAGCGA CAGCTACGTC GTCACCAGTG CGGTAGGCCA CTTGCTGGAG ATTCAGGCGC CGGAAGAATT TGACGTCAAG CGCGGCAAGT GGAGCTTTGC CCACCTGCCC GTGATTCCGC CGCACTTTGA TCTCAAGCCG GTGGACAAAA CCAAAACGCG CCTGAACGCC GTGGTCAAAC TGGCCAAGCG CAAGGATGTG GACCAACTCA TCAACGCCTG TGATGCCGGG CGCGAGGGCG AGCTGATCTT TCGCCTGATC GAGCAATATG CGGGCGGGGC CAAGCCGCTG GGCAAGCCGG TGCGCCGCTT GTGGCTGCAG TCCATGACGC CGCAAGCCAT TCGCGACGGT TTCAACACCC TGCGCTCCAA CGAACAAATG TTGCCGCTGG CCGACGCGGC GCGCTGCCGC TCGGAGGCCG ACTGGCTGGT CGGCATCAAC GGCACGCGCG CCATGACGGC GTTCAACTCG CGCGACGGCG GCTTCTTTCT GACCACCGTG GGCCGGGTAC AAACACCGAC CTTGAGCGTG GTGGTGGAGC GCGAGGAAAA AATCCGCGCC TTTGTGTCGC GCGACTATTG GGAGGTGCAC GCCACCTTCG CCGCGCAGGC GGGCGACTAC CCGGCCAAAT GGTTTGACCC GCAGTGGAAA AAAGCCGCCG CCAATGCCGC CGCCGGTAAC CTTGAGGAGG CCGACCCGGA GCTCAAGGCC GACCGCCTGT GGCAGCAGCG CGAAGCGCAA GCGATTGCCG ATGCCGTGCG TGGCCAAACC GCCAGCGTCA CCGAAGAGAG CAAGCCGACC ACGCAGGCTT CTCCCTTGCT GTTTGACTTG ACTTCCCTGC AGCGTGAGGC CAACGGCAAG TTCGGCTTTT CCGCCAAAAC CACGCTGTCG ATCGCGCAAA GCCTGTACGA GCGTCACAAA GCCCTGACCT ACCCGCGCAC CGACTCGCGC GCGCTGCCCG AGGACTACCT GCCGGTGGTC AAGCAAACGT TCGAGATGCT CTCAAAAAGC GCCATGCGCC ATCTGGCACC ACACGCATTG ACGGCGCTGA ACAACAACTA CATTCGCCCC AGCAAACGAA TCTTTGACAA CAGCAAGGTG AGTGACCACT TTGCCATCAT CCCGACCCTG CAGGCGCCCA GCGGCTTGAG CGAAGCCGAG CAGAAGATTT ATGACCTGGT GGTGCGCCGC TTCATGGCGG TGTTTTTCCC GAACGCTGAA TACCAGATCA CGACCCGAAT TTCCGTGGCC GCCGGCCACA GCTTCAAGAC CGAAGGCAAG GTGCTGGTCA AGCCCGGCTG GCTGGCCATT TACGGCAAAG AGGCCGTCGA TGAAGTGACG GATCGTGACG GCGCCAAAGA CGGCGACAAG GGCCAGCGCC TGGTGCCGGT GCAAGCCGGT GAACGCGTCA CGGCGCAGAC GGTCGAGGCC CGTGGCCTGA AAACCCGACC CCCCGCACGC TACACCGAAG CCACGCTGCT GGGCGCCATG GAAGGCGCCG GGAAAACCAT TGAAGACGAT GAGCTGCGCG CCGCCATGCA CGAAAAAGGC CTGGGCACAC CGGCCACCCG CGCCAGCATC ATTGAAGGCC TGCTGACGCA GAAATACATG CTGCGCGAAG GCCGCGAGCT GATCCCCACC GCATCGGCGT TTCAGCTCAT GACGCTCTTA CGCGGCCTGG ATGTCAAGGA GTTGTCCAAA GCCGAATTGA CCGGCGAGTG GGAACACAAG CTGGCACTGA TGGAGCACGG TCAGCTCAGC CGGGCTGAGT TCATGGCCGA GATTGCCGCC ATGACCGAGC GCATGGTGAA GCAGGCCAAG GAATACGACC GCGACACCGT CCCCGGCAAC TACGCCACTT TGACAGCACC GTGCCCGAAC TGCGGCGGCA TCATCAAGGA AAACTACCGC CGCTACACCT GCACCGGCAA GACCGGCGCG GAGGAAGGCT GCGGCTTCTC CTTTGGCAAG ACCCCGGCCG GGCGAACCTT TGAAGTGGCC GAAGTGGAGC AGTTTCTGCG CGACAAAAAG ATTGGCCCGC TGGAGGGTTT CCGCTCCAAG GCGGGCTGGC CGTTCACGGC TGAGATGGTG ATCAAGTTCG ACGAGGAAAG CAAAAACTAC AAGCTCGAAT TTGACTTTGG CGACGACAAG AAGGGCGAGG AAAGCGGTGA ACTGATCGAC TTCAGTGGCC AGGAGTCACT GGGCGCCTGT CCCAAATGCG GTGCTCCCGT GTTTGAGCAT GGCAAGAACT ACGTCTGCGA AAAGTCCGTG CCCACCGACG CCCAGGCCAC GCCCAGCTGC GACTTCAAGA CCGGCCAGAT CATCCTGCAG CAGCCGATTG AGCGCGAGCA GATCGCCAAG TTACTGGCCA CCGGCAAGAC CGATTTGCTC GACAAGTTTG TCTCCATGCG CACCCGGCGC GGCTTCAAAG CCATGCTGGC CTGGGACGCC GAGGCCGGCA AAGTGAATTT TGAGTTTGCA CCAAGCAAAT TCCCGCCGCG CAAAACCGCC GCCAAGTCGG CAGCCGGGGC CTCGGTAGCT GCAAAAACAG GAGCAGCTCG AGCAGCAACA ACGGGGGCTG CAGCCAAGAA AGCCGCTAAA AAAGTGGCCA GCCCCAAAGC CGCGGCCAAG GCCAGCGCCA AAACGCCGCG CAAGGCAGCG GTCAAAAAAG TCGCCAGCCC AGCCGCCGGC CTGCAGCCCA GCGCGGCATT GGCCGCCGTG ATTGGCGCGG AACCGGTGGC GCGGCCGCAG GTGATCAAGA AGCTGTGGGA CTACATCAAG GCCAACAATC TGCAGGACGC CGTCAACAAG CGCAACATCA ATGCCGACGC CAAACTGCTG GCCGTGTTCG GCAAGCCGCA GGTGACGATG TTCGAGCTGG CCGGCATTGT CGGAAAACAC CTGGCGTGA
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Protein sequence | MKTLIIAEKP SVAQDIVRAL TPVAGKFDKH DEHFESDSYV VTSAVGHLLE IQAPEEFDVK RGKWSFAHLP VIPPHFDLKP VDKTKTRLNA VVKLAKRKDV DQLINACDAG REGELIFRLI EQYAGGAKPL GKPVRRLWLQ SMTPQAIRDG FNTLRSNEQM LPLADAARCR SEADWLVGIN GTRAMTAFNS RDGGFFLTTV GRVQTPTLSV VVEREEKIRA FVSRDYWEVH ATFAAQAGDY PAKWFDPQWK KAAANAAAGN LEEADPELKA DRLWQQREAQ AIADAVRGQT ASVTEESKPT TQASPLLFDL TSLQREANGK FGFSAKTTLS IAQSLYERHK ALTYPRTDSR ALPEDYLPVV KQTFEMLSKS AMRHLAPHAL TALNNNYIRP SKRIFDNSKV SDHFAIIPTL QAPSGLSEAE QKIYDLVVRR FMAVFFPNAE YQITTRISVA AGHSFKTEGK VLVKPGWLAI YGKEAVDEVT DRDGAKDGDK GQRLVPVQAG ERVTAQTVEA RGLKTRPPAR YTEATLLGAM EGAGKTIEDD ELRAAMHEKG LGTPATRASI IEGLLTQKYM LREGRELIPT ASAFQLMTLL RGLDVKELSK AELTGEWEHK LALMEHGQLS RAEFMAEIAA MTERMVKQAK EYDRDTVPGN YATLTAPCPN CGGIIKENYR RYTCTGKTGA EEGCGFSFGK TPAGRTFEVA EVEQFLRDKK IGPLEGFRSK AGWPFTAEMV IKFDEESKNY KLEFDFGDDK KGEESGELID FSGQESLGAC PKCGAPVFEH GKNYVCEKSV PTDAQATPSC DFKTGQIILQ QPIEREQIAK LLATGKTDLL DKFVSMRTRR GFKAMLAWDA EAGKVNFEFA PSKFPPRKTA AKSAAGASVA AKTGAARAAT TGAAAKKAAK KVASPKAAAK ASAKTPRKAA VKKVASPAAG LQPSAALAAV IGAEPVARPQ VIKKLWDYIK ANNLQDAVNK RNINADAKLL AVFGKPQVTM FELAGIVGKH LA
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