| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3932 |
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| Symbol | |
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| ID | 3961572 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 4393763 |
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| End bp | 4397170 |
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| Gene Length | 3408 bp |
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| Protein Length | 1135 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637918757 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_525162 |
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| Protein GI | 89902691 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2202] FOG: PAS/PAC domain
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAAACGC GCTCCAGTTT TGAAACCAAG GTGCTGGTCG CGTTTACCGC TGCCGTGCTG
GTGGTTGCGG GACTCGCCAC CACCACCTGG AAGGTGGCGC AAGGCGCTGC CGAAGCGGCA
CACTGGGTAG CGCACACCCA CGAGGTGCTT GATAGCCTTG CCCAAACAAG GGCAAACACG
CTTCAGATCG AATTCAGCAC GCAAAGCTAC AGGATTTCGG GCGACCCGGC GCGACTTGCC
GAACGCGATG CGACGATTGC GACGCGGGAA ACCCTGCTGA GCCAGGTCAA GCAGCTCACC
AGCGACAATG CCCGCCAGCA GGAGCGCTGG ATGCGGCTGC GCGAGGTCAT TGATGAACGA
CTCGCAATTT CCAGACGTGT CGAATTCTTG CGAAAGACCC AGGGCCTCGA AGCCGCGAGC
GCATTTGTGG CAAGCGCTCC GCTGCAGGAA ACGCGCGAGC GCACCTACGG CCTATTGCGC
GAGATGAACG AAGAGGAGCG TCGGCTCTTG GAGGACCGCA ATGCCGAGCA GTTGCGTGCG
CGCCAAAGCA TGGTGGCTGC CGGCGCGCTG GTCGCGCTCT TGCTGCTCGC GCTGCTTACG
GCCACCTTTG GATTGATTCG GCGTCAGTTG CGCGAAACCG AAGCAAGTCG ACGCGCGCTC
GCCGACAGCG AGGAGAGCCT CTCCACCACG CTGTATTCGA TCGGCGATGC GGTGCTGGCG
ACGGACACCG AGGCACGTAT CACGCGCATG AATCCGGTTG CGGAAGCTCT CACCGGCTGG
CCCTTCGCCG ACGCGCAGGG CCGCCCCGTC GAGGAGGTAT TTCGTATTGT CAACGAACAC
ACCCGGGAGC CGGCCGAGGT GCCGGTGGCC AAGGCGCTGG CCACTGGCGA AATCCAGGAG
CTGGCCAATC ACACTGTGCT GATCGCGCGC GATGGCAGCG AGCGCCCTAT TTCCGACAGC
GCGGCGCCGA TACGCGATAC CAGGGGACGG GTGGGCGGCG TGGTGCTCGT TTTCCGAGAT
GTGACCATTG CGCACCAGGC CCAACAGACA ATCCGCGAAC AGAACGAACT GCTGGAACAG
CGCGTACACG AGCGGACGAT TCAACTGCAC GAGAGCGAGG ATCACCTGCG CAGCGTGATC
AGCAACGTGC CCGTGATGAT CGCCTACGTC GATGCGCAGC AGCGCTACAT CTATGTCAAT
CAGTCGTACC GGGAGCGTTT CTCGCCCGGG CAGGCCGACA TCGCGGGTCA GACGGTGCGC
GACATCCTGG GCCACGAACG CTATGCCGTC GCCGCCCCAC TCATTGCCAA GGTGTTGCAA
GGACAGCCGC AAAGCTACGA CTGGCAACCC TTCCCCGGTG TCTGGCAGCT CGTCAACTAC
GTGCCCAAGC GCGATGCCCG GGAAGGGGTG GTCGGCTATT ACGTGCTGGG CACCGACCTC
ACCGAGCGTA AACACGCCGA GGAAAAGATC CGCACGCTCA ATGCCGAGCT CGAGCAGCGC
GTGCGCGAGC TGGAGCATGT CAGCCGTGCA CTGCGCACCC TGAGCGCGGG TAACCGCACC
ATGCTGCGCG CGACCGTCGA GCAAGGCTTG CTCGACAATA TGTGCCGGGC CATCGTGGCC
AACGGCGGCT ATCAAATGGC GTCGGTGTGG TACCGGATCG ATGATGAATT CAAATCACTG
CGGGCGATGG CGGAAAGTGG TCACCCGGGC GGCCTCGACG CTCTGCATCA GATGAAGGGT
AGCTGGGCCG ACAACGAGTA CGGCGGCGGC GCGGTCGCCT CTGCGATCCG CACTGGGCAG
GCCAGCGTGG TCCAGAACAT CCTCGCCGAT CCGAATTACG CACCGTGGCG GCCCTATCTG
CCAGGCTATG CCTGCGTCAT TGCCTGCCCG CTGCGCGTCG ACGGCGAGAT CATCGGTGGG
CTCGCCATTT ACTCTGCTGA GCCGGATTCC TTTGGATTGG ATGAAGTGAC GCTTCTCACT
GAATCGGCTG ATGACCTGGC TTTTGGCATT GCCACCCTGC GCGCACGCGC CGAGCAACAA
AAAATCCAGC AGGCAATGGA GCGCCTGACG CGCTACGACG CCCTCACGGG ACTACCCAAC
GAGACTCAAT TCACGGAGTT CCTCGCTGCT GCCATAGATG CCGCCAAGCG GCTCAACCAG
CCATTCGCCG TGCTGCAAGC CAATGTCGAA CGGCTGAGTG AGATCAATGA TGCCCTTGGG
TTCGGCCACG GCGATCAATT GCTGCGGGAG TTCGGAGCAC GGCTATGCGT CGCCGCGCCG
GCGTCTGCCA TGGTCGCGCG CCTGCGGGGT GATGAATTCG CGATCCTGCT GCCCGACAGC
AACGCCAATA GCGTCATCAC CATGCTGCAA CGCGTGGAAG ACGTGTTGGC GCAGCCGTTC
CCGGTCGCCG ACATTGCGCC AGATGTGTCG GCCAAAATCG GTGTCGCGTT GTTTCCACAA
CATGGGGCGA CACCCCACGA CCTGTTCCGG CATATGGACA TGGCTGTGCA CCAGGCCAAG
AAAAAAGGTG TGAAGCACGC CATCTTCGAT CCAGACCTGA ACCAGGACCA ATCGCGCCGT
CTGACTATGG CCGGGGAACT GCGGCGGGCG ATCGAGGGTG GTGATCTGTT GCTCTACCTG
CAGCCGAAAG TGGAGATCAC CACCGGTCGC TTGTGCGGCG CCGAAGGACT GGTTCGCTGG
AAGCACGCAG AGCGTGGGCT GATTCCGCCG GGCGAATTCA TTGGGCTCGC CGAACAAACC
GGGCTCATCA AGCCGCTCAC CGAATGGGTG ATCAAGACCA GCTTGCGCTT GAACCAGGCC
TGGCAGTATG AAGGCTGCGC ACTGCCAATC GCCGTTAACC TTTCTGCACA CAACCTGCAC
GACGAAAGGT TGCTGCAAAC AATCCGCCAC TTGCAGACCA CATATGGCGT GGCTGCCGGC
CTGCTCGAAC TTGAAAACAC CGAGAGCGCG GTGATGGACG ACGCCGAATT CGCACTGCGT
GTATTGCACA GCCTGCGCGA TGAAGGCATA CCGCTTTACA TCGACGACTT CGGTACCGGT
TATTCCTCGC TCAGCTATTT GCAGAAACTA CCGGTGGAGT ACATCAAGAT CGATCAATCG
TTTGTACGCG ACATGACAAT CAGCAGGGAT TCCTCGCTGA TCGTGCGATC TACGATCGAC
CTGGTCCGTG ACCTCGGACG CAAGACGGTG GCCGAGGGCA TCGAGACCCA GGAACAATGG
GATCAACTCG CCGCATGTGG TTGCGATATC GCGCAAGGCT ACTTCATCGC CAGACCGATG
CCGGCCGAGG ACTTCCAGAA CTGGGTCAAA CAATTTCGTG CGCCTGTCAC GACACCGTCG
GGTAAAGCCT GCGGAACGCC GCTCGACATT CAGTCAGCAA TCTCATAA
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| Protein sequence | MKTRSSFETK VLVAFTAAVL VVAGLATTTW KVAQGAAEAA HWVAHTHEVL DSLAQTRANT
LQIEFSTQSY RISGDPARLA ERDATIATRE TLLSQVKQLT SDNARQQERW MRLREVIDER
LAISRRVEFL RKTQGLEAAS AFVASAPLQE TRERTYGLLR EMNEEERRLL EDRNAEQLRA
RQSMVAAGAL VALLLLALLT ATFGLIRRQL RETEASRRAL ADSEESLSTT LYSIGDAVLA
TDTEARITRM NPVAEALTGW PFADAQGRPV EEVFRIVNEH TREPAEVPVA KALATGEIQE
LANHTVLIAR DGSERPISDS AAPIRDTRGR VGGVVLVFRD VTIAHQAQQT IREQNELLEQ
RVHERTIQLH ESEDHLRSVI SNVPVMIAYV DAQQRYIYVN QSYRERFSPG QADIAGQTVR
DILGHERYAV AAPLIAKVLQ GQPQSYDWQP FPGVWQLVNY VPKRDAREGV VGYYVLGTDL
TERKHAEEKI RTLNAELEQR VRELEHVSRA LRTLSAGNRT MLRATVEQGL LDNMCRAIVA
NGGYQMASVW YRIDDEFKSL RAMAESGHPG GLDALHQMKG SWADNEYGGG AVASAIRTGQ
ASVVQNILAD PNYAPWRPYL PGYACVIACP LRVDGEIIGG LAIYSAEPDS FGLDEVTLLT
ESADDLAFGI ATLRARAEQQ KIQQAMERLT RYDALTGLPN ETQFTEFLAA AIDAAKRLNQ
PFAVLQANVE RLSEINDALG FGHGDQLLRE FGARLCVAAP ASAMVARLRG DEFAILLPDS
NANSVITMLQ RVEDVLAQPF PVADIAPDVS AKIGVALFPQ HGATPHDLFR HMDMAVHQAK
KKGVKHAIFD PDLNQDQSRR LTMAGELRRA IEGGDLLLYL QPKVEITTGR LCGAEGLVRW
KHAERGLIPP GEFIGLAEQT GLIKPLTEWV IKTSLRLNQA WQYEGCALPI AVNLSAHNLH
DERLLQTIRH LQTTYGVAAG LLELENTESA VMDDAEFALR VLHSLRDEGI PLYIDDFGTG
YSSLSYLQKL PVEYIKIDQS FVRDMTISRD SSLIVRSTID LVRDLGRKTV AEGIETQEQW
DQLAACGCDI AQGYFIARPM PAEDFQNWVK QFRAPVTTPS GKACGTPLDI QSAIS
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