| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3918 |
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| Symbol | |
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| ID | 3961558 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 4375506 |
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| End bp | 4377215 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637918743 |
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| Product | glucose-methanol-choline oxidoreductase |
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| Protein accession | YP_525148 |
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| Protein GI | 89902677 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACACCA CTTTTGACTA CATCATCGTC GGCGCCGGCA CCGCAGGCTG CCTGCTGGCC
AACCGGCTTT CCAAGGACCC GGCCAAGCGC GTGCTGCTGA TCGAGGCCGG CGGCAAGGAC
GACTACCCCT GGATTCATAT CCCGGTGGGC TACCTGCATT GCATTGGCAA CCCGCGCACC
GACTGGCTGT TTCAGACCGA GCCCGAGACG GGTCTCAATG GCCGCGCCTT GCGCTACCCG
CGCGGCAAGA CGCTGGGCGG CTGCAGCAGC ATCAACGGCA TGATTTACAT GCGCGGCCAG
GCGCACAACT ATGACCAGTG GGCGAGCCTC ACGGGTGACC CGGCCTGGTC CTGGCAAAAC
AGCTTGAGCG ACTTCATGGC GCACGAGAGT CACTACAAAT TGGATAGCTA CTCAAGTCCT
GTGGACGGGG GCCAGAGCGC TAAAAAGCTT GAGGATTTCA AGAACTTCCA TGGCGCAAAC
GGCGAGTGGC GGGTCGAAAA ACAACGCCTG CGCTGGGACA TCCTGGACGC CTTTGCCCAG
GCCGCGCAGC AGGCCGGCAT CGCGCCGACC GAGGACTTCA ACGCCGGGTC CAACGAGGGT
GTCGGTTACT TTGAGGTTAA TCAGAAAAAG GGCTGGCGCT GGAGCACGGC GAAGGCTTTT
TTGCGTCCCA CCTGCATGAA TCGGCCCAAT TTTGAACTCT GGACCTCGGC GCAAGTGGTC
AAGCTGCAAC TGCAAACCCA GCTTGATGGC AGCCTGCGCT GCAGCGGTGT GCAGGTGTGG
ATGGGCGGCG AGATGGTCAA CGCCACGGCG ACCGGCGAGG TCATCCTGAG TGCCGGCAGC
ATCGGCTCGC CGCAGATTTT GCAGCTCTCG GGCATTGGCC CGGCCGCGCT CTTGCAGCGG
CATGGCATTG CGGTGCAGGT GGACGCGCCG GGAGTGGGCG CGAACTTGCA GGATCACTTG
CAGATTCGCA CCGTGTTCAA GGTGACGGGC GTCAAAACCC TCAACACACA GGCCAACTCG
CTGTGGGGCA AGGCCATGAT CGGCCTGGAG TACGCGCTCA AGCGCAGTGG CCCGATGAGC
ATGGCGCCGA GCCAGTTGGG CGCCTTTACC CGCAGCGATG CCAGCCAGCC CTACCCCAAC
ATCGAGTACC ACGTGCAGCC GCTCAGCCTG GACGCTTTTG GCGAGCCGCT GCACCACTTC
AACGCCTTCA CCGCCAGCGT GTGCAACCTG CAGCCCAGCA GCCGCGGCAC GGTGCAGATC
CAGAGCCCCC GCTTTGATGC GGCGCCGGCG ATTGCGCCGC ACTACCTGAG CACCGAGGCC
GACCGCCAGG TGGCGGCGGA TTCACTTCGC CTGACGCGCG CCATCGTGGC GCAGCCGGCG
CTGGCCAAGT ACCAGCCGCA AGAGTTCAAG CCGGGCGTTC AGTTTCAGAC CGACGAGGAA
CTGGCGCGCC TGGCCGGCGA TATTGCCACC ACCATTTTTC ACCCGGTCGG CACCACCAAA
ATGGGGGCGG CCGACGACCC GCTGGCGGTG CTGGATTCAC ACTTGCGGGT GCGTGGCGGG
AATGGCGGCC TGGTGGCGGG CTTGCGCGTG GTCGACGCTG GCGTGATGCC GGTCATCACC
AGCGGCAACA CCAACTCACC CACTTTGATG ATTGCGGAAA AGGCGGCGCG CTGGATAATT
GAGGATTCAA CCCGCCGGAG AGAAGGGTAA
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| Protein sequence | MNTTFDYIIV GAGTAGCLLA NRLSKDPAKR VLLIEAGGKD DYPWIHIPVG YLHCIGNPRT
DWLFQTEPET GLNGRALRYP RGKTLGGCSS INGMIYMRGQ AHNYDQWASL TGDPAWSWQN
SLSDFMAHES HYKLDSYSSP VDGGQSAKKL EDFKNFHGAN GEWRVEKQRL RWDILDAFAQ
AAQQAGIAPT EDFNAGSNEG VGYFEVNQKK GWRWSTAKAF LRPTCMNRPN FELWTSAQVV
KLQLQTQLDG SLRCSGVQVW MGGEMVNATA TGEVILSAGS IGSPQILQLS GIGPAALLQR
HGIAVQVDAP GVGANLQDHL QIRTVFKVTG VKTLNTQANS LWGKAMIGLE YALKRSGPMS
MAPSQLGAFT RSDASQPYPN IEYHVQPLSL DAFGEPLHHF NAFTASVCNL QPSSRGTVQI
QSPRFDAAPA IAPHYLSTEA DRQVAADSLR LTRAIVAQPA LAKYQPQEFK PGVQFQTDEE
LARLAGDIAT TIFHPVGTTK MGAADDPLAV LDSHLRVRGG NGGLVAGLRV VDAGVMPVIT
SGNTNSPTLM IAEKAARWII EDSTRRREG
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